Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00069 ATGAGATTGAATAACATGGGAAGAAGAAAcggtggtggcggaggcggaggcggcggcggcggaggaggAAGGTCTCTCCAATTTGCTCTCCGCCGTCGAGTGGAACACTGCAAATCAAAATACACAACAGCCGAAGAAATCGTGGATCATCTTCGCTCAAATTACCCTGATTACCAACGAACTAAGTACCAAACACTCATTCGATTTGTTCACGATGCTCTTCAATTTTCcaacaacactcccacacggaacaataatcaaaacaacaacaatgacaacgaaaacgacgacgacGAAGAAATTCGAACATCTTCTCGAAAGAGACGCAAAGATACCATTGATGAAGCTGAAGATAGATTGCGAAAGATGGAAGAACGTCACATCAAAACAAGGATGAGCACGCAGGTTCCATCAACCTCCTCCGATTCTACTTCCGGCAACAGTGACGATGATGACGACGAAGACGGAGCAGTTTCGACCTCGGAGGACGCAATTTACGGAACCAAATCAGTTCCTATGGTAGAAGAAAATAACGTTGAATTGGATATGGGAAATACCAGTAAAGCCACTATTGCTGTTAATATGGATGGCGGTGAAGCTAAGTCGGTCACAAAAGGTGAAAAATTGAAGGGTTCGGCTTCTAACAAtggcggcggcggcggcggcggtggtggtgatgatggggtgAAAGAAAAAGAAGGGCCTAGGTTTAAGGATTTGGGTGGGATGAAGAATATTTTAGAGGAATTGATGATGGATATTGTGTCATTGTGTAATCCTCAATTGCCTAGACATTTAGGAGTGAGACCAGTGACTGGAATTTTGTTGCATGGACCACCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATTGCTAATGAAACTGGTCTTCCTTTCCATCATATTTCAGCTACTGAGGTGGTTTCTGGAGTCTCAGGTGCATCTGAAGAATATATTAGAGATCTTTTCAGTAAAGCAAAAAGGACTGCTCCGTCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAGATGGAGAAACGAATTGTCACCCAGTTAATGACTTCCATGGACGAGCCAGAGAGTTCTGATGAATCTCATGGCTATGTTCTTGTAATTGGAGCCACAAATAGGCCTGATTCGCTTGACCCTGCTCTTAGACGGCCTGGTCGGTTTGATCGTGAGTTTTTTGTTGGTGTTCCTGATGAATCTGCCAGGGAGGAGATCCTTTCTGTGCTTACTCGCAATCTTAAACTTGACGGTTCGTTTGATCTGCACAAAATAGCTAGGTCTACACCAGGATTTGTTGGTGCTGATTTGGCAGCTCTGGCTAACAAAGCTGGTAATCTGGCAATGAAGAGGATAATTGATGAAAGGAAACGTGAATTATCTCAAGATCTCACAAGTGAGAATACTAAAAGCTGGTGGAGGGAACCTTGGTTGCCTGAAGAAATAAATAAGCTTGCTATCAAAATGTCTGATTTCGAGGAGGCAGCCAAAATGGTGCAACCTTCAGCAAGAAGAGAAGGGTTCTCGTCCATTCCTAATGTTAAATGGGAAGATGTCGGTGGACTTGATTCCTTAAGGCGTGAGTTTGATCGCTACATTGTAAGGCCTATAAAACATCCTGAGTGTTATGAGAACATTGGGATGAATCTTGagtctggatttttgctttatggacctccaggttgtggtaaaacactGATTGCCAAGGCAGTTGCCAATGAGGCGGGAGCTAATTTCATTCATATTAAGGGACCTGAGCTTCTAAATAAATATGTTGGGGAAAGCGAGCTTGCAGTGCGAACATTGTTTAGTCGTGCAAGGACTTGTGCACCATGTGTACTTTTTTTTGATGAGGTTGATGCTTTGACTACTGAGCGTGGTAAAGAAGGTGGATGGGTTATTGAAAGACTGTTGAACCAGTTGCTTATTGAGTTAGATGGTGCAGAGCAACGGAGGGGTGTTTTTGTGATTGGTGCAACAAATAGGATGGAGGTGATGGACCGCGCTCTCTTACGGCCTGGTAGGTTTGGCAAACTGCTTTATGTTCCTCTTCCAAGCGCAGACAACCGTGTTTTGATATTGGAAGCTCTTGCAAGGAATAAACATATTGATTCCAGTGTGGATTTGAGTGTCATTGGAAGAATGGAGGCATGTGAAAACCTTAGTGGTGCTGATCTTGCAGAATTGATGAATGAAGCAGTAATGGCTGCTCTTGACGAGAAGTTGGACTCGACTGAGACAACCAACGATACATTGACCATTAGGGCAAGTCATTTTGAGGTAGCACTAAGTAAAGTCTCTCCCTCTGTGTCAGACAAGCAAAGGAAGTACTATCAGCTTTTGTCAGAGAAAAATAAAGCAGCATGA 2400 0.3925 MRLNNMGRRNGGGGGGGGGGGGGRSLQFALRRRVEHCKSKYTTAEEIVDHLRSNYPDYQRTKYQTLIRFVHDALQFSNNTPTRNNNQNNNNDNENDDDEEIRTSSRKRRKDTIDEAEDRLRKMEERHIKTRMSTQVPSTSSDSTSGNSDDDDDEDGAVSTSEDAIYGTKSVPMVEENNVELDMGNTSKATIAVNMDGGEAKSVTKGEKLKGSASNNGGGGGGGGGDDGVKEKEGPRFKDLGGMKNILEELMMDIVSLCNPQLPRHLGVRPVTGILLHGPPGCGKTRLAHAIANETGLPFHHISATEVVSGVSGASEEYIRDLFSKAKRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDEPESSDESHGYVLVIGATNRPDSLDPALRRPGRFDREFFVGVPDESAREEILSVLTRNLKLDGSFDLHKIARSTPGFVGADLAALANKAGNLAMKRIIDERKRELSQDLTSENTKSWWREPWLPEEINKLAIKMSDFEEAAKMVQPSARREGFSSIPNVKWEDVGGLDSLRREFDRYIVRPIKHPECYENIGMNLESGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCVLFFDEVDALTTERGKEGGWVIERLLNQLLIELDGAEQRRGVFVIGATNRMEVMDRALLRPGRFGKLLYVPLPSADNRVLILEALARNKHIDSSVDLSVIGRMEACENLSGADLAELMNEAVMAALDEKLDSTETTNDTLTIRASHFEVALSKVSPSVSDKQRKYYQLLSEKNKAA 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00069 799 Pfam AAA+ lid domain 431 466 IPR041569 -
Car01g00069 799 Pfam AAA+ lid domain 717 759 IPR041569 -
Car01g00069 799 ProSitePatterns AAA-protein family signature. 665 683 IPR003960 GO:0005524|GO:0016887
Car01g00069 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 513 IPR027417 -
Car01g00069 799 Gene3D - 409 517 - -
Car01g00069 799 MobiDBLite consensus disorder prediction 77 91 - -
Car01g00069 799 Gene3D - 696 775 - -
Car01g00069 799 Gene3D - 523 790 IPR027417 -
Car01g00069 799 MobiDBLite consensus disorder prediction 200 237 - -
Car01g00069 799 Coils Coil 106 133 - -
Car01g00069 799 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 32 793 - -
Car01g00069 799 Gene3D - 227 407 IPR027417 -
Car01g00069 799 MobiDBLite consensus disorder prediction 1 24 - -
Car01g00069 799 CDD AAA 273 407 - -
Car01g00069 799 CDD AAA 563 695 - -
Car01g00069 799 Pfam ATPase family associated with various cellular activities (AAA) 566 694 IPR003959 GO:0005524|GO:0016887
Car01g00069 799 Pfam ATPase family associated with various cellular activities (AAA) 274 407 IPR003959 GO:0005524|GO:0016887
Car01g00069 799 MobiDBLite consensus disorder prediction 77 171 - -
Car01g00069 799 SMART AAA_5 561 697 IPR003593 -
Car01g00069 799 SMART AAA_5 270 410 IPR003593 -
Car01g00069 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 794 IPR027417 -
Car01g00069 799 ProSitePatterns AAA-protein family signature. 378 396 IPR003960 GO:0005524|GO:0016887
Car01g00069 799 MobiDBLite consensus disorder prediction 99 131 - -
Car01g00069 799 PANTHER AAA-FAMILY ATPASE 32 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00069 Car-Chr1 586194 592578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00069 494 795 Calmodulin-binding Proteins AT3G56690 44.079 8.43e-70 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00069 K14571 - gmx:100809594 1038.87