Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00067 ATGGATTCGAACCAAGAAGTGAATTCAATGTATCGTGACATCGACCTAAACATGCCATGCTTTGAGGAGGAGGAGTTGAGCTCAGATGTTGAAAGTACTGAAAACCACTTTTCATCACTCATTCAGAACAATGCTACTCCACAACTTTCTCAAGGCATGAACATAAGCTATGCAAACAATTTTGAAGTGAATGATGAAGCTTCTTTTTCATCACTAAATCTTCTTGCAAAAACTGCTTCTGATGAAGTTGATGTGAGGCGGGTTGGAATTCATGCCATGATTATTCTTGACCCTCTCCGTGGATTCACATCGGGACACGGTCGTCGCCGCTATCGTCGTCGCGGACAAGTTCATCAGATTGATCCATTAAGATTTTGTACTAATTTTCATTGTCGAACAAGGAAAACTCCAATGTGGCGCACTGGACCTTTGGGACCCAAGACTTTGTGCAATGCATGTGGAATTTACTACAACAAACATTTGATGAATGGAGGCATGCCTGCAGCTATAGTCTATGATGGTGTTCCACATGGAAACCATTGA 543 0.4199 MDSNQEVNSMYRDIDLNMPCFEEEELSSDVESTENHFSSLIQNNATPQLSQGMNISYANNFEVNDEASFSSLNLLAKTASDEVDVRRVGIHAMIILDPLRGFTSGHGRRRYRRRGQVHQIDPLRFCTNFHCRTRKTPMWRTGPLGPKTLCNACGIYYNKHLMNGGMPAAIVYDGVPHGNH 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00067 180 SMART GATA_3 122 176 IPR000679 GO:0006355|GO:0043565
Car01g00067 180 Pfam GATA zinc finger 127 160 IPR000679 GO:0006355|GO:0043565
Car01g00067 180 PANTHER GATA TRANSCRIPTION FACTOR 105 160 - -
Car01g00067 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 163 - -
Car01g00067 180 Gene3D - 124 171 IPR013088 GO:0006355|GO:0008270
Car01g00067 180 ProSiteProfiles GATA-type zinc finger domain profile. 130 160 IPR000679 GO:0006355|GO:0043565
Car01g00067 180 CDD ZnF_GATA 129 160 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00067 Car-Chr1 540586 541884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00067 102 180 C2C2-Gata Transcription Factor Family AT5G66320 39.759 8.15e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car01g00067 GATA 4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00067 - - gmx:102663335 100.908