Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00055 ATGCAACAAGGTCAAGGTAATTCAGCACAAGGTCTTCAAATTCCTCAGCTCAATTGGTTGCAGCATGCTAATGCTCACCACAATTTCTCGTCCCAGGCCAAGTTTTTGACCTCAAATTTCCTTTTCTCTATTCCAACTCACAAACCTTCCTCCAACGATGGGAGTGGCAGGTTTGTACTCCGACAAGGTCAAGATATTCAAAGAGCACAGGTTGAGAAGGCTTGGCATGGTCTCTCAAGTCTACAGATATCTAGCAGGAATTATGTCCAACCTGGGAAAACTGTTAAAGTTACTTCTCAGTTTCACGAAGACCGGTCAGCAACTTCCTTCCCAGGAAGCTATGAGAATGACAAGATTAGGCATCCTGATGTCACTGCAACTCCAATTGTCATTAATCATAGTTCTCGGGTTTTAGATACTTCAGTGAACAATCACACAAAGTACGCAAGCCAAACCAACAAGTCTGCAAAATGTGTACCTGATGATATTAATGCTGACGACGATGACATACTCGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAATCCTCTTGCACTCCTCAACCATCAATTTCCAAGTTTCCTCCTATTACACCAATGGCAGATAAGGATAATTTTGCCAGAAATGGGGATATTAATTTGCCACCAGAGCTGTGCTTGGATTGCATCCATGGGTACAAGTTAGGACTTTGCCCTGAAGCTGCAAGTCATTTGCAGGAATTGAAGGATAATCTTATTGCTATCTCTAATGAACTGCTTGACAATGTTGAAAATCTCAGTTCGGTGCAGATAGCAAAGCTTCGCCAAGACAGGTCACAGCTGAATAAGCAAATTCAGCAGCTTGAAAAATATATTCATTCCAGTAATCTCGACGAAGAAAGACAAAAGTCACATTTTTCTACAACCATGGCACCACCTACATCTTTTGTGTATGAAACACCCCAGCGAAATGTCATCAGTAGTGGATCAAATAGATATGATGGCCAGGCTTATACGGGTAATGGGACATATGGGCCGTCGTATCAGTCTTCCTTCCTTTCAGCAGACATGTGTGGCATGCCGTCAGGTCCAGTAGAGAGGGAGCCATTCATCCCAAAGATTATTGAAGTTAATTACATCGAAGGTTCTGGAGATAAACGATGGAGCAGCCGGGATTTTTCTTGGACTAAAGAGTTAGAGGTTAATAATAAGAGAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGGGGCAAAAGTCTGACCTATCAGCTTCCAGCTCTTATTAATCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGAGATCCTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTGTATGTGACACCCGAAAAGGTTGCCAGAAGTGACGTTCTTCTGCGACACTTGGAGAGTTTACATGTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGGCTTGGTGTATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACTGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTCGTTAACTGCATTATTTTTCGGCAAAGTTTTAATCGCCCAAATTTATGGTATTCCATTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGACAAGTTTATTAGGGAAAACCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGCCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGCTCAACGTGCTTTTGTTCAAAAGCAATGGAGCAAAGATGAGGTCAATATAATTTGTGCTACCGTGGCATTTGGAATGGGAATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAGTCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAGCGTTCATCCTGTGTATTATACTACAGCTACAGTGACTATATTCGAGTGAAGCATATGTTAAGCCTAGGAGCAATAGAGCAAAGTCCCATGACATCTGGATACAGTCGTTTAAATGGGACAAATTCAGGAAGGATGCTGGAAACGAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTTGATTGCCGGCGCCTTATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACTTGTCAGAAAACATGTGATAATTGTGTGAAGGTCACAAGTTTCATTGAGAAGGATGTCACTGAAATTGCAAAACAATTGGTTGAACTAGTTAAGCAAACAGGACAGAAGGTCTCAGCATCTCATTTATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGGCATGAGACTGTGCGTCTTCATGGTGCTGGGAAACATCTAGCCAAGGGTGAGGCTTCCCGTGTATTGCATCATCTTGTTGTTGAGGATTTTCTTGCGGAGGAGGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAACATTGAAGGTAAATGAAGCAAAGGTTCAGAATGTGCTGTTTGGTGGGCAAAGAATTATATTGAGATTCCCGTCTCTTGTGAAAGCATCAAAGCCAGGGAAATGTGATCCAACTCCAGCCAAAGGTTCTCTGACATCTGGGAAGCTGAATCTTCCCTTTGACATTCCTGACCAACATCAAACTGAAGTAGACTTGAATCTGTCAGCTAAGTTATACACTGCTCTGCGGATGTTGCGGACAGCTCTTGTTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGCAATGCTACATTGCAGCAGATAAGCAAGAGAGTACCGAGAACAAAGGAAGAGCTTCTTGATATCAATGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTATTGGAAACCATTGAGAAAACCATAAATGAATACTACAACATGGATAAAAGCAGCAGTGGCAGCAAAGGCAGTACTGATTCGACCAAAAGAAGACGAGAGACAAATAGAGACCCAGATTCAAATGCCGAGGATGATGATGATGAGGCCTTAATCAAAAGTACCGGTCGCTCCAAGAAAAGGACAGTAAAGAGACTAATCAAAAAAGCTGAGGTATATGATTCTGCAGAGGAAGATTATTACCAAGGATGCCTTGATGAGGATCTAGACAACATTGAAAACGATGCATTAAATAAATTAGCTGGTACAAATGTTTCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3474 0.4148 MQQGQGNSAQGLQIPQLNWLQHANAHHNFSSQAKFLTSNFLFSIPTHKPSSNDGSGRFVLRQGQDIQRAQVEKAWHGLSSLQISSRNYVQPGKTVKVTSQFHEDRSATSFPGSYENDKIRHPDVTATPIVINHSSRVLDTSVNNHTKYASQTNKSAKCVPDDINADDDDILENIDVDQIVEKYQSSCTPQPSISKFPPITPMADKDNFARNGDINLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNVENLSSVQIAKLRQDRSQLNKQIQQLEKYIHSSNLDEERQKSHFSTTMAPPTSFVYETPQRNVISSGSNRYDGQAYTGNGTYGPSYQSSFLSADMCGMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSIVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSLGAIEQSPMTSGYSRLNGTNSGRMLETNTENLLRMVSYCENDVDCRRLIQLVHFGEKFDSSTCQKTCDNCVKVTSFIEKDVTEIAKQLVELVKQTGQKVSASHLLEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRVLHHLVVEDFLAEEVKKSDFYGSVSSTLKVNEAKVQNVLFGGQRIILRFPSLVKASKPGKCDPTPAKGSLTSGKLNLPFDIPDQHQTEVDLNLSAKLYTALRMLRTALVREAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEYYNMDKSSSGSKGSTDSTKRRRETNRDPDSNAEDDDDEALIKSTGRSKKRTVKRLIKKAEVYDSAEEDYYQGCLDEDLDNIENDALNKLAGTNVSGRVLPQWTAS 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00055 1157 Coils Coil 266 286 - -
Car01g00055 1157 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 114 1125 - -
Car01g00055 1157 SMART helicmild6 640 721 IPR001650 -
Car01g00055 1157 Gene3D - 598 817 IPR027417 -
Car01g00055 1157 Pfam Helicase conserved C-terminal domain 614 720 IPR001650 -
Car01g00055 1157 MobiDBLite consensus disorder prediction 1067 1081 - -
Car01g00055 1157 Gene3D HRDC domain 973 1062 IPR044876 -
Car01g00055 1157 SUPERFAMILY HRDC-like 977 1050 IPR010997 GO:0000166|GO:0044237
Car01g00055 1157 PANTHER DNA HELICASE RECQ FAMILY MEMBER 114 1125 - -
Car01g00055 1157 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 529 538 IPR002464 -
Car01g00055 1157 Pfam RQC domain 820 934 IPR018982 GO:0006260|GO:0006281|GO:0043138
Car01g00055 1157 SMART hrdc7 974 1056 IPR002121 GO:0003676
Car01g00055 1157 CDD SF2_C_RecQ 598 730 - -
Car01g00055 1157 Gene3D - 371 597 IPR027417 -
Car01g00055 1157 Gene3D - 821 931 IPR036388 -
Car01g00055 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 615 776 IPR001650 -
Car01g00055 1157 SMART RQC_2 823 934 IPR018982 GO:0006260|GO:0006281|GO:0043138
Car01g00055 1157 ProSiteProfiles HRDC domain profile. 974 1056 IPR002121 GO:0003676
Car01g00055 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 415 590 IPR014001 -
Car01g00055 1157 Pfam RecQ zinc-binding 732 813 IPR032284 -
Car01g00055 1157 MobiDBLite consensus disorder prediction 1056 1093 - -
Car01g00055 1157 Pfam HRDC domain 978 1046 IPR002121 GO:0003676
Car01g00055 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 864 IPR027417 -
Car01g00055 1157 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 399 874 IPR004589 GO:0004386|GO:0006310
Car01g00055 1157 ProSiteProfiles Rhodanese domain profile. 630 672 IPR001763 -
Car01g00055 1157 SMART ultradead3 403 606 IPR014001 -
Car01g00055 1157 CDD DEXHc_RecQ 398 597 - -
Car01g00055 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 739 IPR027417 -
Car01g00055 1157 Pfam DEAD/DEAH box helicase 409 577 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00055 Car-Chr1 446228 455150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00055 630 734 Eukaryotic Initiation Factors Gene Family AT1G72730 23.810 5.30e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00055 K10901 - gmx:100800006 1810.81