Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00045 ATGGAAACTCACTTCAATCACACTCTCTTCGAGAGGCGCCCCTTTCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAAACAATGGGTTCCTCAAGATGTTGTGGCCACCGGTGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACCATAAAGACCTTGAAAGAAAAGGTACAAGAACCTTTAGCTCCTGAGCCAGAACCTGAACCAACTACCGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACTTTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCATTATGAAGGATGTGGAAAGAAATTTTTGGACAGCTCAAAGTTAAAAAGGCATTTCCTAATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGACTTCAACCTAAGGTCTCACATGAAGACACATTCACAAGAGAACTATCATATATGCCCATACCCGGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCTCATCATGAAAAGAGTACACCAATGGAGATGACAAAGTATACCACTCCTCCATCAGAAAAGCAAACAAAAACTGCTAAACCTTCTGGGGGAGCATACGGTTCGGCATCCTCTGATCGCCCATACGCATGTCCCTATGAAGGATGTGAAAAAGCGTACATTCATGAGTACAAGCTTAAACTGCATTTGAAGAGGGAGCATCCTGGCCACATGTCTGATGAAGCTGTCGTTCATGCTCTGGCAAATAATGCTGACAATGATATGGATGAAGCAAGTGATCATGATGCTTATGGTGGGAAACGGCCCAATGGTAAAAGTCAGAAGCAAAGTAGGCCGAAGCCAAACTTGAAAATGCCTCCTTCCAAAGTTGCCCAACGAAAAGGGTCTGCTCCAACTCCTGCCACTTTTAATATGGTTAAAAAACCATGGCCAGTGAAAGAAGAAACTTATGATGAAGACAGCGAAGAAACTGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGACGAGGAAACAGAATATGAAGACTGA 1122 0.4394 METHFNHTLFERRPFLKSKAPAVKWVKQWVPQDVVATGGKCMLLRWVTEDTIKTLKEKVQEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPMEMTKYTTPPSEKQTKTAKPSGGAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDEAVVHALANNADNDMDEASDHDAYGGKRPNGKSQKQSRPKPNLKMPPSKVAQRKGSAPTPATFNMVKKPWPVKEETYDEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00045 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
Car01g00045 373 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Car01g00045 373 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Car01g00045 373 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Car01g00045 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Car01g00045 373 Gene3D Classic Zinc Finger 163 195 - -
Car01g00045 373 Gene3D Classic Zinc Finger 103 133 - -
Car01g00045 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 196 IPR013087 -
Car01g00045 373 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Car01g00045 373 PANTHER BNAA03G13270D PROTEIN 5 372 - -
Car01g00045 373 SMART c2h2final6 136 160 IPR013087 -
Car01g00045 373 SMART c2h2final6 230 255 IPR013087 -
Car01g00045 373 SMART c2h2final6 166 190 IPR013087 -
Car01g00045 373 SMART c2h2final6 106 130 IPR013087 -
Car01g00045 373 SMART c2h2final6 77 101 IPR013087 -
Car01g00045 373 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Car01g00045 373 MobiDBLite consensus disorder prediction 275 289 - -
Car01g00045 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Car01g00045 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Car01g00045 373 MobiDBLite consensus disorder prediction 188 227 - -
Car01g00045 373 MobiDBLite consensus disorder prediction 274 373 - -
Car01g00045 373 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 5 372 - -
Car01g00045 373 Gene3D Classic Zinc Finger 201 267 - -
Car01g00045 373 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Car01g00045 373 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Car01g00045 373 MobiDBLite consensus disorder prediction 198 220 - -
Car01g00045 373 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Car01g00045 373 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Car01g00045 373 Gene3D Classic Zinc Finger 134 161 - -
Car01g00045 373 Gene3D Classic Zinc Finger 77 102 - -
Car01g00045 373 SUPERFAMILY beta-beta-alpha zinc fingers 225 253 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00045 10 359 C2H2 Transcription Factor Family AT4G06634 65.123 5.09e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g00045 zf-C2H2 0.0089 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00045 - - zju:107412546 639.802