Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00031 ATGTCTTCAAGATTTTGGACCCAGGGTGACAGTGATTCGGAGGAGGAGCAGAGTGATTACGATGAAGAGATTGAAACCACAGCTGTTGATTCTGCTGCCACTGCAGCCAATAAAAGCAATTACTACCTGCAGAGTGGTAATGCAACTGATAGTGATGACGAGGATGGCCAAAAGCGTGTTGTTAAGTCAGCAAAAGATAAGCGTTTTGATGAGATGGTTTCCACTGTGGATCAGATGAAGAATGCCATTAAGATCAACGACTGGGTCAGTTTGCAAGAGAGTTTTGACAAGATCAACAAACAGCTTGAGAAAGTCATGCGTGTTATTGAGTCCGAAAAGGTCCCTAATCTTTATATTAAGGCTCTTGTAATGCTTGAAGATTTCTTAACACAGGCTTTGGCAAACAAGGATGCCAAAAAGAAGATGAGTAGCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAGAAATTGAAGAAGAATAACAAGCAATATGAGGAGTTGATCAATAAATGCAGGGAGAATCCTGAGAGTGAAGGGGAAAAGgaggacgatgaggagtctgatgaagaatatgagagtgatgatgagattattgatCCAGATCAGCTAAGGAAGCAGGAACCAAAATCTGATTCTGAAGCTTCTCAGTATGAAGATGAGAAGCCTGATGCTGATGGTGAAGGGCCTTGGGACCAAAAGCTTAGCAAGAAAGATAGGCTTTTGGAGCGACAGTTCATGAAAGACCCTAGTGAGATCACATGGGATACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCAGCTAGGGGTAGGAAGGGTACCGGAAGGTTTGAACAAGTTGAACAGCTTACCTTCTTAACTAAAGTGGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTCAATCCAGGGCTCAGTGGGCATATGCCCATTAATGTGTGGAAAAAATGTGTGCAGAATATGTTGGTCATTCTCGATATTCTAGTTCAGCACCCTAACATAAAGGTCGATGATTCCGTGGAGCCTGATGAGAATGAAACCAAGAAAGGTGTTGATTTTGACGGACCCATTCGTGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCACACACGTGAGTATGTTGAGAGGCTTAGGGATGAGCCCATGTTTTTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGGAGTGGAGATTTCAAAGCTTCTTCTAAGGTGGCCTTGAAGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGAGGCAATGAAAAAATTGGCTGAGCTGACAGAAGATGGTGATAATGAAGGGGAGGCCGGTGAGGACTCAAAAGGTTTTCAGGATACAAGAATTCCCACTGCATTTGTTGTTACCCCAGAGCTTGTGGCACGAAAACCCACCTTCCCTGAGAATAGCAGGACCTTAATGGATATATTAGTATCACTAATATACAAATACGGAGACGAGCGCACCAAAGCGCGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTAATGAGTTCACGGTATCCCGTGATCTGTTGCTTATGAGTCATTTACAAGAAAATGTTCACCACATGGACATTTCAACTCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCACATGGCTGTCTATCTGAACTTTACTCTGGTGGAAGGGTGAAAGAATTGCTTGCACAGGGAGTTTCACAGAGTCGATATCATGAAAAGACACCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCACATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTATATCTGCTATGCTGCTGGAAGTTCCTAATATGGCAGCCAATGTTCATGATGCAAAGCGTAAGATCATTAGTAAGAATTTCCGTCGCTTGCTGGAGATCAGTGAGAAACAAACATTCACTGGTCCTCCTGAAAATGTTCGGGATCATGTTATGGCTGCCACGAGGGCTCTTAGTAAAGGAGACTTCAACAAGGCTTTTGACATTATTGCATCTCTTGATGTATGGAAATTTGTGAAAAATCGAGATGCCGTGCTAGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATACCTATTTACCTTCTCTTCATCGTATGATTCTTTAAGCTTGGATCAGCTCACGAATTTTTTCGACCTCTCTCTTCCTCGCGTTCACAGTATTGTCAGTAGGATGATGGTCAATGAGGAGCTTCACGCCAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCAGAAATGTTGAGCATTCTAGGGTGCAGGCATTGGCATTCCAGTTGACAGAGAAGTTATCTATCCTGGCAGAAAGCAATGAAAGAGCTACAGAAGCAAGGATTGGGGGCGGTGGGTTGGATCTGCCTCCAAGGCGCAGAGATGGCCAGGATTATGCTGCTGCAGCTGCAGGTGGTGGTAGTGGAGCATTATCTTCAGGTGGAAGGTGGCAAGACTTGTCTTATTCTCAAACAAGGCAAGGCGGTGGACGTGGAGGTTATGGTGGAAGGGCATTGTCATTTGGTCAAGCTGGCGGCTATTCAAGGGGACGAGGTACTGGTGGGAGTGGCTATCAAAGTTCAGGGAGGACTCAAGGAGGTTCGGCACTTAGGGGACCCCACGGAGATGTTTCTACCCGCATGGTTAGTCTTAGGGGAGTTCGTGCTTAG 2802 0.4358 MSSRFWTQGDSDSEEEQSDYDEEIETTAVDSAATAANKSNYYLQSGNATDSDDEDGQKRVVKSAKDKRFDEMVSTVDQMKNAIKINDWVSLQESFDKINKQLEKVMRVIESEKVPNLYIKALVMLEDFLTQALANKDAKKKMSSSNAKAFNSMKQKLKKNNKQYEELINKCRENPESEGEKEDDEESDEEYESDDEIIDPDQLRKQEPKSDSEASQYEDEKPDADGEGPWDQKLSKKDRLLERQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVEPDENETKKGVDFDGPIRVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPMFFVLAQNVQEYLERSGDFKASSKVALKRVELIYYKPQEVYEAMKKLAELTEDGDNEGEAGEDSKGFQDTRIPTAFVVTPELVARKPTFPENSRTLMDILVSLIYKYGDERTKARAMLCDIYHHALLNEFTVSRDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLISAMLLEVPNMAANVHDAKRKIISKNFRRLLEISEKQTFTGPPENVRDHVMAATRALSKGDFNKAFDIIASLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTNFFDLSLPRVHSIVSRMMVNEELHASWDQPTGCIVFRNVEHSRVQALAFQLTEKLSILAESNERATEARIGGGGLDLPPRRRDGQDYAAAAAGGGSGALSSGGRWQDLSYSQTRQGGGRGGYGGRALSFGQAGGYSRGRGTGGSGYQSSGRTQGGSALRGPHGDVSTRMVSLRGVRA 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00031 933 MobiDBLite consensus disorder prediction 897 911 - -
Car01g00031 933 MobiDBLite consensus disorder prediction 137 156 - -
Car01g00031 933 ProSiteProfiles PCI domain profile. 625 797 IPR000717 -
Car01g00031 933 SUPERFAMILY "Winged helix" DNA-binding domain 721 796 IPR036390 -
Car01g00031 933 MobiDBLite consensus disorder prediction 889 933 - -
Car01g00031 933 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 726 814 - -
Car01g00031 933 MobiDBLite consensus disorder prediction 1 23 - -
Car01g00031 933 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 932 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car01g00031 933 Coils Coil 147 174 - -
Car01g00031 933 MobiDBLite consensus disorder prediction 170 235 - -
Car01g00031 933 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 657 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car01g00031 933 SMART PINT_4 726 814 IPR000717 -
Car01g00031 933 MobiDBLite consensus disorder prediction 136 156 - -
Car01g00031 933 MobiDBLite consensus disorder prediction 198 235 - -
Car01g00031 933 MobiDBLite consensus disorder prediction 178 197 - -
Car01g00031 933 Pfam PCI domain 665 793 IPR000717 -
Car01g00031 933 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 932 - -
Car01g00031 933 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 877 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00031 1 933 Eukaryotic Initiation Factors Gene Family AT3G56150 68.081 0.0 1187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00031 K03252 - gmx:100779751 1456.81