Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00030 ATGGCATCTGCCGCTAGTCTtggaattggaaatggaaacggaaacggaaatggtaatggTGGGGTCGGCAGTTCCAGGTCTGCTGCCTTAAGAGGTTCTTCTAGCTCTGTCGATTGGCTTGGGAGAGAGATGCTTCAGATGAGGCTCAGGGACAACCTcgaccacgatcatcatcacgatcatcacgatcacgatgatgatgacAGAGAGAGTGAGCCTGACATCATCGACGGTGTGGGTGCTGAAACAGGACATGTAATACGAACCAGCATTGGCGGACGAAATGGTCAATCTAAGCAGAATGTTAGTTATATTGCCGAGCATGTCGTTGGTACCGGCTCTTTTGGCGTTGTCTTTCAAGCAAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAAGTTCTCCAGGACAAGCGCTACAAGAACAGAGAGTTACAGATTATGCAAATGCTGGACCATCCAAATATTGTCGCCCTTAGGCATTGTTTCTTTTCCACAACTGACAAAGAAGAACTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACCGTCAATCGTATTGCGAGGAGCTATAGCAGGATTAACCAGCGAATGCCTCTAATATACGTCAAACTTTATACATACCAGATATGCAGGGCACTTGCTTACATACATAATTGCATTGGCATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCGCACACTCATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCTTATATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGCGCTACTGAATACACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCTACCAGAGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATAAAACCTCACCCATGGCACAAGGTCTTTCAGAAACGCTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTTTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTCGATGAACTGAGGGACCCAAACACTCGCCTTCCCAATGGTCGCCCACTGCCTCCGCTGTTTAATTTTAAACCTCAGGAACTTTCTGGTATTCCACCTGATGTCATCAACCGGCTTATTCCAGAACATGCTCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1329 0.4131 MASAASLGIGNGNGNGNGNGGVGSSRSAALRGSSSSVDWLGREMLQMRLRDNLDHDHHHDHHDHDDDDRESEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00030 442 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 16 439 - -
Car01g00030 442 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 16 439 - -
Car01g00030 442 SUPERFAMILY Protein kinase-like (PK-like) 103 415 IPR011009 -
Car01g00030 442 Gene3D Transferase(Phosphotransferase) domain 1 184 432 - -
Car01g00030 442 MobiDBLite consensus disorder prediction 56 77 - -
Car01g00030 442 Gene3D Phosphorylase Kinase; domain 1 89 183 - -
Car01g00030 442 CDD STKc_GSK3 99 391 IPR039192 -
Car01g00030 442 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00030 442 MobiDBLite consensus disorder prediction 1 31 - -
Car01g00030 442 Pfam Protein kinase domain 106 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00030 442 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00030 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Car01g00030 442 ProSitePatterns Protein kinases ATP-binding region signature. 110 134 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00030 Car-Chr1 273862 279832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00030 110 396 Core Cell Cycle Gene Families AT1G76540 35.786 3.67e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Car01g00030 Pkinase 2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00030 K03083 - gmx:100799387 801.586