Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00028 ATGGGGGACGAATCTCCAAAGAATAAAGTCAAGTTCCTTTGCAGTTACGGCGGAAAGGTTCTTCCCCGTCCCTCCGATGGCGTCCTCAAGTATGTTGGCGGCGAGACTCGCGTCATTTGTGTCCCTCGTGACGTCACTTTATCCGAGATGATGAAGAAAGTGAGTGTGATGGTTGATGGAGATGTTGTATTAAAGTACCTGCTGGTTCCTGAAGAACTTGATACATTAGTATCAGTTAGAACGCAGGAAGATTTAAAGCACATGATTCAAGAACACGATCGACACGAAAGTGGAGGATCCCCATTGCTTCGTGCTTTTCTATTCCCTTCCAAACCACTTGTCATTGAATCACAGAATCAATTGCAATTGCAATTGCAATCACAATCACATCCACTGTCTCTTGAACCATATTTCTTGGAACAGCGTTACATTGATGCCATCAATGGAATCATCAGGACAAGTCCCAGGGCTAAGTTCTCAACACGCTCTGCATGTTCATCACCAAAATCAATATCGCCGGATGGACATACTACCACGGAATCTCCGTTCCAAGGTTCACAGCAGTTGCAGAGTAGGACGACAATGCAAAGAGTGAGAAGTTCTCCAAGTTTATCAAACCTTAATACACAAGCATCAACGCAGTTTGATCATGGTGTTAGCAGTAGTCATTATCACCATCATCATCCTCTTATATCTACGTTTAGACCAATACAAGAACATCCCCAACGTTTAGACCAATACAAGAACATCCCCAACAAGGGATGa 765 0.4366 MGDESPKNKVKFLCSYGGKVLPRPSDGVLKYVGGETRVICVPRDVTLSEMMKKVSVMVDGDVVLKYLLVPEELDTLVSVRTQEDLKHMIQEHDRHESGGSPLLRAFLFPSKPLVIESQNQLQLQLQSQSHPLSLEPYFLEQRYIDAINGIIRTSPRAKFSTRSACSSPKSISPDGHTTTESPFQGSQQLQSRTTMQRVRSSPSLSNLNTQASTQFDHGVSSSHYHHHHPLISTFRPIQEHPQRLDQYKNIPNKG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00028 254 SMART PB1_new 24 110 IPR000270 GO:0005515
Car01g00028 254 MobiDBLite consensus disorder prediction 234 254 - -
Car01g00028 254 Gene3D - 30 108 - -
Car01g00028 254 CDD PB1_UP2 13 108 - -
Car01g00028 254 PANTHER OS05G0427100 PROTEIN-RELATED 4 246 - -
Car01g00028 254 SUPERFAMILY CAD & PB1 domains 25 115 - -
Car01g00028 254 Pfam PB1 domain 29 109 IPR000270 GO:0005515
Car01g00028 254 PANTHER OS05G0427100 PROTEIN 4 246 - -
Car01g00028 254 MobiDBLite consensus disorder prediction 158 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00028 Car-Chr1 266057 267778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00028 9 254 MAP Kinase Kinase Kinase AT5G57610 33.948 1.08e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00028 - - mtr:MTR_2g005700 339.732