Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00024 aTGGTCCCTTTGACCTTAATTGTTTTAACTCTGTTTTCTGTTCTGTTTTCCTCTGTTTTTGCTTCATCCTTGTTCGGTGATTTCAATGTCTTACTCTCACTTAAAGAAGGGTTTCAATTCCCAAACCCAGTTCTAGACACATGGAACACTTCCAATTTCAACTCAGTTTGTTCATGGGTTGGAATTCAATGCCACCAAGGTCGAGTTGTGTCGGTGAACTTATCCGATTTGACTCTGTCTGGCTCTGTTTCACCTTCAATTTCATCACTTGATAAACTCACACACCTTTCCCTTTCAGGAAACAACTTCACTGGAACCATTCACATCACAAATTTAACAAAACTTCAATTTCTAAACATCTCCAATAACCAGTTCAGTGGCCACATGGATTTGAACTACTCCACCATGGAAAACTTGCAAGTTATTGATGTTTACAACAATAACTTCACATCTTTGCTTCCATTGGGACTTATTAGTTTGAAGAGTAAGCTGAGGTACTTGGATCTTGGTGGTAACTTTTTCTATGGAGAAATCCCAAAAAGCTATGGAAAATTAGTTTGTCTTGAGTATCTGTCACTAGCTGGAAATGATATCAATGGAAAAATACCTGGTGAGTTGGGGAATCTAAGTAACTTGAGAGAGATTTACTTGGGCTATTACAACTCTTTTGAAGGTGGAATTCCAGTTGAGTTTGGAAAGTTGATAAATTTAGTTCACATGGATCTTTCAAGCTGTGATTTGGATGGTTCAATACCAAGAGAGTTTGGTAACTTGAAAAAGCTTGATACACTTTACTTGCATATCAACCAGCTTTCAGGTTCAATACCAAAACAACTTGGTAACTTGACTAACTTGGTTTACTTTGACCTTTCAAGCAATGCACTCACAGGTGAAATCCCTTTTGAGTTCATCAACCTCAACAAACTCAAACTTTTCAATCTTTTCTTGAACAGGTTACATGGTTCTATACCTGACTACATTGCAGATTTGCCTTATTTAGAGACACTTGGCCTTTGGATGAACAACTTCACAGGTGAAATTCCATACAAACTTGGTCTTAATGGGAACCTTCAAGTTCTTGACTTGTCCTCTAATAAACTCACCGGTGTCATTCCACCTCATCTTTGTTCCTCAAAACAGCTTAGGATTTTGATTCTTCTGAATAATTTTCTGTTTGGACCCATACCTGAAGGTCTAGGAACATGTTACAGTCTGACTAGAGTGAGATTAGGACAGAATTATCTGAATGGTAGCATTCCAAATGGTTTTCTTTACCTTCCTAAGCTAAATTTAGCAGAGTTGAAAAACAACTACTTATCAGGAACTTTATCAGAAAATGGTAATACTTCATCTCAGCCTGTTAGTTTAGAACAACTTGATTTGTCAAACAATGCATTATCTGGTTGTTTACCACATTCACTATCAAATTTCACTTCCCTTCAAATACTTTTGGTAAGTGGAAACCAATTCTCGGGTGGAATTCCGAGTTCGATCGGAGGACTAAATGAAGTGCTGAAAATGGACCTTAGCAGAAACTCATTATCAGGAGAAATTCCAGGTGAAATTGGAAAGTGTGTCCATCTCACCTACCTTGACATGAGCCAGAACAATCTATCTGGAACCATCCCAGCATTGATATCAAACATACGTATTTTGAATTACTTGAATATATCTAGAAACAATTTGAACGAAAGCATCCCAAGATCAATAGGGACAATGAAAAGCCTGACAGTTGCTGATTTCTCGTTCAATGAATTATCAGGTAAGTTGCCAGAGTCAGGTCAATTTGCATTCTTTAAAGCGTCGTCATTCGCAGGAAATCCAAAACTATGCGGTTCTGTATTGAACAATCCATGTAAGTTGAGAGGAGGAATGAAAAGAAGAGAAGGAAAAAAGAGTGGAGATATGAAGCTGATATTTGCAGTTGGACTATTGATATGCTCCATAGTGTTTGCAATTGGAGGCATTATAAAAGCAAAGAGATTGAAAAAGAATGGAGGTGGTGGTTGTTGGAAGATGACGGCATTCAAAAAGGTGGAATTCACGGTTACTGATATACTAGAATGCGTGAAAGATGGGAATGTGATTGGAAGAGGAGGTGCAGGAATAGTATACCATGGAAAAATGGGAAATGGGGTGGAAATAGCAGTCAAAAAGTTAGTTGGTTTTGGTGCAAATAGTAATGATCATGGATTCAGAGCTGAAATACAAACACTTGGAAACATAAGACACAGAAACATAGTCAGACTACTTGCATTCTGTTCTAACAAACAAACAAATCTACTTGTTTATGAATACATGAGAAATGGTAGCTTAGGTGAGGCATTGCATGGGAAAAAAGGTTGTTTTTTGACTTGGAATTTTAGGTACAAAATTTCAATTGACTCTGCTAAAGGACTTTGCTACCTTCACCATGATTGTTCCCCTTTGATCCTACACAGAGATGTCAAATCTAACAACATTTTGTTGAGTTCAAATTTCGAAGCACATGTGGCTGATTTTGGACTAGCAAAGTTCTTGGTCGATGGTGGCGCATCGGAGTGTATGTCTTCAATTGCAGGCTCCTACGGCTACATTGCACCTGAATATGCTTATACATTGAGGGTGGATGAAAAGAGTGATGTTTATAGTTTTGGAGTAGTTCTATTAGAGCTTATAACAGGGAAGAAACCAGTTGGTGATTTTGGAGAAGGTGTGGATCTTGTACAATGGTGTAAGAAATCAACCAACGGAGGTAGAAGAGAAGATGTTTTCAACATTGTTGATTCAAGGCTTGTTGTTGTTCCTAAAGAGGAAGTCATGCACATGTTCTTCATTGCCATGTTATGTTTAGAAGAAAACAGTGTCCAAAGACCAACCATGAGGGAAGTGGTTCAGATGCTTTCTGAATTTCCTCCACAAttctcttcttcttcttcttcttctCATTCAAATCCTACTCTTAAACAAGACCTTTTGGTTTAA 2964 0.3755 MVPLTLIVLTLFSVLFSSVFASSLFGDFNVLLSLKEGFQFPNPVLDTWNTSNFNSVCSWVGIQCHQGRVVSVNLSDLTLSGSVSPSISSLDKLTHLSLSGNNFTGTIHITNLTKLQFLNISNNQFSGHMDLNYSTMENLQVIDVYNNNFTSLLPLGLISLKSKLRYLDLGGNFFYGEIPKSYGKLVCLEYLSLAGNDINGKIPGELGNLSNLREIYLGYYNSFEGGIPVEFGKLINLVHMDLSSCDLDGSIPREFGNLKKLDTLYLHINQLSGSIPKQLGNLTNLVYFDLSSNALTGEIPFEFINLNKLKLFNLFLNRLHGSIPDYIADLPYLETLGLWMNNFTGEIPYKLGLNGNLQVLDLSSNKLTGVIPPHLCSSKQLRILILLNNFLFGPIPEGLGTCYSLTRVRLGQNYLNGSIPNGFLYLPKLNLAELKNNYLSGTLSENGNTSSQPVSLEQLDLSNNALSGCLPHSLSNFTSLQILLVSGNQFSGGIPSSIGGLNEVLKMDLSRNSLSGEIPGEIGKCVHLTYLDMSQNNLSGTIPALISNIRILNYLNISRNNLNESIPRSIGTMKSLTVADFSFNELSGKLPESGQFAFFKASSFAGNPKLCGSVLNNPCKLRGGMKRREGKKSGDMKLIFAVGLLICSIVFAIGGIIKAKRLKKNGGGGCWKMTAFKKVEFTVTDILECVKDGNVIGRGGAGIVYHGKMGNGVEIAVKKLVGFGANSNDHGFRAEIQTLGNIRHRNIVRLLAFCSNKQTNLLVYEYMRNGSLGEALHGKKGCFLTWNFRYKISIDSAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHVADFGLAKFLVDGGASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELITGKKPVGDFGEGVDLVQWCKKSTNGGRREDVFNIVDSRLVVVPKEEVMHMFFIAMLCLEENSVQRPTMREVVQMLSEFPPQFSSSSSSSHSNPTLKQDLLV 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00024 987 SUPERFAMILY RNI-like 71 392 - -
Car01g00024 987 Gene3D Phosphorylase Kinase; domain 1 671 766 - -
Car01g00024 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Car01g00024 987 ProSiteProfiles Protein kinase domain profile. 690 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00024 987 PANTHER UNNAMED PRODUCT 6 967 - -
Car01g00024 987 SUPERFAMILY L domain-like 354 612 - -
Car01g00024 987 Gene3D Transferase(Phosphotransferase) domain 1 767 982 - -
Car01g00024 987 Gene3D Ribonuclease Inhibitor 136 221 IPR032675 -
Car01g00024 987 Gene3D Ribonuclease Inhibitor 222 318 IPR032675 -
Car01g00024 987 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Car01g00024 987 Gene3D Ribonuclease Inhibitor 319 623 IPR032675 -
Car01g00024 987 Pfam Leucine Rich Repeat 236 258 IPR001611 GO:0005515
Car01g00024 987 Pfam Leucine Rich Repeat 356 376 IPR001611 GO:0005515
Car01g00024 987 Pfam Protein tyrosine and serine/threonine kinase 693 961 IPR001245 GO:0004672|GO:0006468
Car01g00024 987 SMART LRR_sd22_2 354 375 - -
Car01g00024 987 SMART LRR_sd22_2 525 551 - -
Car01g00024 987 SMART LRR_sd22_2 90 114 - -
Car01g00024 987 SMART LRR_sd22_2 453 479 - -
Car01g00024 987 SMART LRR_sd22_2 282 308 - -
Car01g00024 987 SMART LRR_sd22_2 185 214 - -
Car01g00024 987 ProSiteProfiles Leucine-rich repeat profile. 356 377 IPR001611 GO:0005515
Car01g00024 987 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 6 967 - -
Car01g00024 987 SMART LRR_typ_2 258 282 IPR003591 -
Car01g00024 987 SMART LRR_typ_2 185 209 IPR003591 -
Car01g00024 987 SMART LRR_typ_2 136 159 IPR003591 -
Car01g00024 987 SMART LRR_typ_2 454 476 IPR003591 -
Car01g00024 987 SMART LRR_typ_2 477 501 IPR003591 -
Car01g00024 987 SMART LRR_typ_2 355 378 IPR003591 -
Car01g00024 987 Pfam Leucine Rich repeat 525 540 IPR001611 GO:0005515
Car01g00024 987 SMART serkin_6 690 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00024 987 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Car01g00024 987 MobiDBLite consensus disorder prediction 967 987 - -
Car01g00024 987 SUPERFAMILY Protein kinase-like (PK-like) 681 961 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00024 Car-Chr1 241601 245094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00024 21 965 Receptor kinase-like Gene Family AT5G65700 56.830 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car01g00024 PK_Tyr_Ser-Thr 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00024 - - rcu:8263279 1465.29