Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00020 atGGGTTGTATATGCTCGAAAGGAAAATCAGCAAATGAATACGTCGCCGAAAACCACAGAAGAGAATTGAAGGCAAAGAGATCATCATCATCATCAAAGCATTTGATTGTtaataataataataataataataatGATGCGACTACACACCTCATATCCAACACCTATCGTGATTCATCCGatgaaaacgaaaacgaaaatgaaaatgaaaatAATGCATCCGAAAAAGTAGTTAGTAAGAGAATAATTACTactacttctacaacaacaacaactactactactagtagtGTGAGTGTGGGTGTTATTAGTAAAGGTTTTCAAATTAAGAGTTCTCTTGTTGTTGCTGGATGGCCTTCTTGGCTCACCGCCGTTGCCGGAGAAGCCATCTCCGGTTGGATACCTCGCAGAGCCGACTCTTTTCACAAGTTGGACAAGATTGGCCAAGGTACTTACAGCAGTGTTTACAGAGCTCGTGATCTTGAAACTAACAAAATTGTTGCCTTGAAGAAGGTCAAATTCGCTAATATCGATCCAGAAAGTGTTCGTTTTATGGCTAGAGAAATCATTCTCCTGCGAAGGCTCGATCATCCAAATGTCATGAAACTTCAAGGAATGATTACTTCAACACTTTCTGGTAGCTTGTACCTTATTTTTGAATATATGGACCATGATCTTTCTGGTCTTGCAGCAATACCTGGCGTCAACTTTACCCAACCACAGATCAAGTGTTATATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCACAGTCGCGGTGTTATGCATCGTGATATCAAGGGGTCAAATCTTCTGCTTGACAATAACGGCAATCTGAAGATTGCTGATTTTGGGCTTGCAACTTCCTTTCAGCCATCTCAAGAGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGGCCGCCTGAACTTTTACTCGGAGCTACCAGTTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTAGCAGAACTGTTCGCCGGGAAGCCTATAATGCCCGGGAGAACTGAGGTGGAGCAACTTCATAAAATCTTCAAGCTCTGTGGATCTCCTTCTGAAGATTACTGGAAGAAGTCAAAGCTACCACATGCGACAATTTTCAAACCTCAACAACCTTACAAACGTGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCACTGAGCCTCTTGGAGGTCCTACTTGCTATTGAACCAAAAGATCGAGGAACTGCATCTTCAACACTTCAGAATGAGTTCTTCACATCAAATCCACTTCCTTGTGATCCAACAACTTTGCCAAAGTACCCACCAAGTAAGGAACTTGATGTCAAATTTCGAGAAGAGGATGCTAGAAGGCGACGCACAGCAAATAAAGGACATGGACAGGAATCAGTTGGAAGGAATTTTAAAGAGTCTAAGGTTGTCCCAGCACCTGAAGCTAATGTCAATTTTCAGGCATCAATAGAGAAGAGACAAGGGCAGTGTAATTCAAAATGTGTTAGTGAGAAGTACAATCCTGAAGAGGAAGGAGGTTATGGTTTCCCTCTTGGACCTGTAAAGTCAAAAGCACAGAATATCTTCTCTCATTCGGGCCAGTCAATGCATCCAAGTGCATATGGATCTTCATGCAATATGAATTTAAGAGGGGAAGATGTTCTTATTGGACCTGATCGTGTCTTTACATCAAGAAACTCTGAACTGAGAAAACAAAATTCCTATTGGCACGGTAGCACTGCAAAATTGTCCAGATTTTCTAATTCGGTTGCAGTTCGAGGTGATTCACGGTTTGATATGAGTGGAGACTGTAGTTTGAATTCACAGTGGCAAGAGGATCACTTTGATATGAGATATAGTCATTTGGCTAATGGTGAGTCCAGTCAATTGCTGGATGGAACCAAACATTCTCGCAAGGAAGAATTCCATCTACTCGGGAAGGATCGTTCCATGGGTTATGCTTCCAAAAATAGCCACCTCAACTTTTCTGGACCACTATTGCCTTCAGATGATGATCTTGAAGAGATCCTTAAGGAGCATGAAAGGCAAATCCAACAAGCTGTCCGCAAAGCTCGGTTGAATAAAAAGGCTGGACAGTGA 2109 0.4064 MGCICSKGKSANEYVAENHRRELKAKRSSSSSKHLIVNNNNNNNNDATTHLISNTYRDSSDENENENENENNASEKVVSKRIITTTSTTTTTTTTSSVSVGVISKGFQIKSSLVVAGWPSWLTAVAGEAISGWIPRRADSFHKLDKIGQGTYSSVYRARDLETNKIVALKKVKFANIDPESVRFMAREIILLRRLDHPNVMKLQGMITSTLSGSLYLIFEYMDHDLSGLAAIPGVNFTQPQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIADFGLATSFQPSQEQPLTSRVVTLWYRPPELLLGATSYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLEVLLAIEPKDRGTASSTLQNEFFTSNPLPCDPTTLPKYPPSKELDVKFREEDARRRRTANKGHGQESVGRNFKESKVVPAPEANVNFQASIEKRQGQCNSKCVSEKYNPEEEGGYGFPLGPVKSKAQNIFSHSGQSMHPSAYGSSCNMNLRGEDVLIGPDRVFTSRNSELRKQNSYWHGSTAKLSRFSNSVAVRGDSRFDMSGDCSLNSQWQEDHFDMRYSHLANGESSQLLDGTKHSRKEEFHLLGKDRSMGYASKNSHLNFSGPLLPSDDDLEEILKEHERQIQQAVRKARLNKKAGQ 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00020 702 Coils Coil 56 76 - -
Car01g00020 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Car01g00020 702 MobiDBLite consensus disorder prediction 30 56 - -
Car01g00020 702 SUPERFAMILY Protein kinase-like (PK-like) 135 433 IPR011009 -
Car01g00020 702 Gene3D Transferase(Phosphotransferase) domain 1 224 465 - -
Car01g00020 702 PANTHER CELL DIVISION PROTEIN KINASE 104 695 - -
Car01g00020 702 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Car01g00020 702 Gene3D Phosphorylase Kinase; domain 1 128 223 - -
Car01g00020 702 ProSiteProfiles Protein kinase domain profile. 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00020 702 PANTHER KINASE CDK9, PUTATIVE-RELATED 104 695 - -
Car01g00020 702 Coils Coil 673 700 - -
Car01g00020 702 MobiDBLite consensus disorder prediction 22 78 - -
Car01g00020 702 CDD STKc_CDK9_like 141 425 - -
Car01g00020 702 MobiDBLite consensus disorder prediction 451 472 - -
Car01g00020 702 Pfam Protein kinase domain 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00020 702 SMART serkin_6 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00020 Car-Chr1 214412 219929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00020 133 463 Core Cell Cycle Gene Families AT5G10270 51.585 2.15e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car01g00020 Pkinase 2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00020 - - cam:101495256 1335.86