Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00019 ATGGGAATGGAAGAGGAATCAGAGAGGAAAAGGGAGGTGGGGAGTCGAAAGGAGAAGAGGAAGGCAGCGAAGAAAATGAGGAGGAAGAAGAGAAGGCAGGAGAATGCAGAGATGGCGAGGTTGGAGGAAGAAGCGCGGCTCAACGATCCCGAAGAGCAGAGGAAGATGCTACTATTGGAGCAGCAAGAGGCGGAAAGGATGCAAAGGGATAGGATCGCCTTCGAGGAGAGTGAGAGGGCTTGGATGATCAAACACCAACTACTTCTTCAACAGCAACTAGAAGACGCTGataacaataataataataataataataataataacaataataataaCAACGGTGTCgaagaagaagaatctgaaaaagaagaagatgaagatgaCGGTCCTCCTGAGATTATTTGGCGAGGAAACGAAATAATCATCAAGAAGAAAAAGAAAAAGGCGAACAGCCTCCTCCAACGCCACCAGGAGCATCATGAGTGTGATAGTAATAATAGACCTACATCAAATCCCTTTCCACCGGAATCTCCCTCTCAACCTCACTCCAATTCACCCACCCTGGAGAATGTTGCTCAACAACTACCTAATTTCGGAACTGAACTGGATAAAGCTCACTGTCCTTTTCATCTTAAAACAGGAGCATGTCGTTTTGGTGAACGTTGTAGCAGGGTTCATTTTTACCCTGATAAGTCCTCCACCCTTCTCATCAAAAACATGTACAATGGTCCTGGCCTTGCTTGGGAACAAGATGAAGGCCTTGAGTATACAGAGGAGGAGGTTGAGTTCTGTTTTAAAGAGTTCTATGACGATGTTCACACAGAGTTCCTGAAGTTTGGAGAACTTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTACGTGCAGTATAAGCTGTTGGATTCTGCTTTGCGTGCTTATAACTCAGTTAATGGTCGCTACTTTGCTGGGAAACAGGTGAGTTGTAAGTTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGGGAGTATATGAAATCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGTGGAGACTATGAATGGGCAGATTCTGACAAACCACCCCCAAATTTTTGGGTTAAGCAGATGGCTGCTTTATTTGGTCATTCTGATGATTATGAGATCTCAAGGGTCCATGGAAATTTGTGTGTACTGAACCCCTCCAGCAATGTCTCAAAAACAGATTCTGACAGGTATCACTCTAGAAGATCAAGATCTAGAGAACTGGGTCAGTTAAATGGTGGTCGCTCTGGTAGAAGAATACAGGAAGATGAAAAAAAGCAAAGAACTCCTGATGAGGAGCGGAATACCAACCATAAAAGAAAATGCAGGAACGGAACTCCTGATACTGATACGGAATGGTCAGAAGAGGTAGATCGGGAAAAGTACCATGAACACACTAGGGAAAGCTCGTTTAATAGGAACAGGGACGACGATAGCAGAAGGCATGAAGAGTATTCTGACGTGAATTGGGTAAACAGGGACAGTGAAAAGCAGCATGACAGAAAAGGAAGGAGCTCACGAAAGTGGAACCAGGACAGTAGGGACTGGATTTATGAGGCTGGATCTGATGAGGATAGAGTTAGAAGAAGGCACCACAGCAGCCAACGGAAAGGATCGAGACATCAGAGCAGGGACAACAGAAATCGAACTGATGAATCCGAATCTGATGAAGATAGAGCCCATGAAGAATATTCTGATGTGGATTGGGATACTACAATCAGGCACCATGAAAATCAGCATGACGAAAAAGGAAGGAACTCGCAAATTTATGAGACTGAATCAGATGAGGATAGACACAGAAAAAGGTACTATAGGAGCCAAATGAAAGAAGCAAGACACCGGAGCAGGGACAACAGTTATGTAACCGATGAATCTGAATCTGACAAAGATAGAGAGATGGAAACACAACACAATTACTCTAGGAAAAAGTCAAGGCACAAAAGATCTGGCCTTCAGGATTACCGTAAAGACTGTGATAATGAAAATGACAAGGTTGATGGAGATTGGTCTCAGGGAGAGAGTGATCCACAAGCACATCATCACAAAAAGAAGAGATTATAA 2139 0.4226 MGMEEESERKREVGSRKEKRKAAKKMRRKKRRQENAEMARLEEEARLNDPEEQRKMLLLEQQEAERMQRDRIAFEESERAWMIKHQLLLQQQLEDADNNNNNNNNNNNNNNNNGVEEEESEKEEDEDDGPPEIIWRGNEIIIKKKKKKANSLLQRHQEHHECDSNNRPTSNPFPPESPSQPHSNSPTLENVAQQLPNFGTELDKAHCPFHLKTGACRFGERCSRVHFYPDKSSTLLIKNMYNGPGLAWEQDEGLEYTEEEVEFCFKEFYDDVHTEFLKFGELVNFKVCKNGSFHLRGNVYVQYKLLDSALRAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPNFWVKQMAALFGHSDDYEISRVHGNLCVLNPSSNVSKTDSDRYHSRRSRSRELGQLNGGRSGRRIQEDEKKQRTPDEERNTNHKRKCRNGTPDTDTEWSEEVDREKYHEHTRESSFNRNRDDDSRRHEEYSDVNWVNRDSEKQHDRKGRSSRKWNQDSRDWIYEAGSDEDRVRRRHHSSQRKGSRHQSRDNRNRTDESESDEDRAHEEYSDVDWDTTIRHHENQHDEKGRNSQIYETESDEDRHRKRYYRSQMKEARHRSRDNSYVTDESESDKDREMETQHNYSRKKSRHKRSGLQDYRKDCDNENDKVDGDWSQGESDPQAHHHKKKRL 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00019 712 Coils Coil 93 113 - -
Car01g00019 712 SUPERFAMILY RNA-binding domain, RBD 265 333 IPR035979 GO:0003676
Car01g00019 712 MobiDBLite consensus disorder prediction 96 188 - -
Car01g00019 712 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 333 IPR000504 GO:0003723
Car01g00019 712 PRINTS U2 auxiliary factor small subunit signature 355 367 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car01g00019 712 PRINTS U2 auxiliary factor small subunit signature 207 226 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car01g00019 712 PRINTS U2 auxiliary factor small subunit signature 317 341 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car01g00019 712 PRINTS U2 auxiliary factor small subunit signature 226 246 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car01g00019 712 PRINTS U2 auxiliary factor small subunit signature 290 312 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car01g00019 712 PRINTS U2 auxiliary factor small subunit signature 262 277 IPR009145 GO:0000398|GO:0003723|GO:0089701
Car01g00019 712 SMART c3hfinal6 335 364 IPR000571 GO:0046872
Car01g00019 712 SMART c3hfinal6 202 228 IPR000571 GO:0046872
Car01g00019 712 MobiDBLite consensus disorder prediction 676 705 - -
Car01g00019 712 MobiDBLite consensus disorder prediction 32 66 - -
Car01g00019 712 MobiDBLite consensus disorder prediction 129 146 - -
Car01g00019 712 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Car01g00019 712 MobiDBLite consensus disorder prediction 565 665 - -
Car01g00019 712 Gene3D - 232 331 IPR012677 -
Car01g00019 712 MobiDBLite consensus disorder prediction 550 712 - -
Car01g00019 712 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 16 688 - -
Car01g00019 712 SMART rrm2_1 261 329 IPR003954 GO:0003676
Car01g00019 712 MobiDBLite consensus disorder prediction 443 510 - -
Car01g00019 712 MobiDBLite consensus disorder prediction 96 114 - -
Car01g00019 712 MobiDBLite consensus disorder prediction 1 66 - -
Car01g00019 712 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 207 226 IPR000571 GO:0046872
Car01g00019 712 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 336 363 IPR000571 GO:0046872
Car01g00019 712 MobiDBLite consensus disorder prediction 1 15 - -
Car01g00019 712 CDD RRM_U2AFBPL 234 332 - -
Car01g00019 712 MobiDBLite consensus disorder prediction 416 510 - -
Car01g00019 712 MobiDBLite consensus disorder prediction 16 31 - -
Car01g00019 712 Coils Coil 16 44 - -
Car01g00019 712 ProSiteProfiles Zinc finger C3H1-type profile. 335 365 IPR000571 GO:0046872
Car01g00019 712 MobiDBLite consensus disorder prediction 420 434 - -
Car01g00019 712 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 16 688 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00019 Car-Chr1 203439 210430 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car01g00019 zf-CCCH 1.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00019 K24273 - cam:101495256 1365.9