Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00018 ATGGAGAGGAAGGGGGATATAGAGGAAAGGATTGAGAGAGGAATGTCAGAGGCGTTACTGAGTGGTAGAAGGAAGATCATCAACAACACCTCTTCTCAACTCGCCATCGTTGGATCCAATATTTGCCCCATTCAGAGTCTTGATTACGAGATAATTGAGAATGATCTATTGAAGCAGGATTGGAGGTCAAGAAGAAAAGTTGAGATTTACCAATACGTTGTTCTAAAGTGGACACTTGCACTTCTTATTGGTTTAATTACAGGAATTGTTGGATTCTTGAATAACATTGGAGTTGAGAATATTTCTGGTTTGAAGGTTTTACTGACCAACAATCTGATGCAACAGCAGAAGTATGAAGAAGCATTTGCAATGTACGTTGGGTGTAACATGATATTAGCAGTTGGAGCTGCAGCACTATGTGCATACATTGCCCCTGCAGCAGCAGGGTCTGGCATACCAGAGGTGAAGGCATACCTGAATGGGATAGATGCACATTCTATATTGGCCCCATCTACACTCTTTGTAAAGATATTTGGTTCAATTTTAGGTGTTGGTGCGGGATTTGTTGTGGGGAAAGAAGGACCAATGGTGCATACAGGCGCTTGCATTGCTAATCTACTAGGACAAGGTGGTTCTACAAAATATGGACTGACCTGGAAATGGCTGAGATACTTCAAAAATGATAGAGATAGAAGGGATTTGATCACGTGCGGAgcagctgcaggtgttgctgctgcctttcgtgcccctgttggtggtgtccttttcgcactggaagaagcaacttcaTGGTGGAGGAGTGCTCTTCTATGGCGCACATTCTTTACAAATGCCGTTGTGGCTGTGGTGTTGAGGGCTCTTATACAATTTTGTGAAGAGGGGGGAGGTCAATGTGGTCTTTTCGGCAAAGGAGGACTCATTATGTTTGATGTTAATTCTGCAAAGCCTGCCTACACCACACCAGACCTCTTGGCAGTTATTCTTTTTTTGGGTGTTATTGGAGGTCTTATGGGCAGCCTTTACAATTATCTTATCGATAAGCTCCTTCGCACTTACTCCATTATAAATGAGAAAGGTCCAATATTCAAAATCCTACTTGTCATGATTATCTCCTTTCTCACATCTTGTATTCGATTTGGGCTTCCATTACTATCCAAGTGTGTGCCATGTCCGGGGGAATGCCCCGCTCCCCCAACTGCAAATTTTCATGACTGTCCACCCAACCACTACAATGATCTCAGCTCTCTCTTTTTTACTACCAACGACGATGCCATCCGAAACCTATTCATTGATGGCCAAAATACAGGATTTCAACTTTCAACTCTCATCATTTTCTTTGTGTCGATATACTTGTTGGGAATTGTGACTTACGGTGTTGCCATTCCCTCTGGCCTCTTCATTCCTGTCATACTTGCTGGAGCTTCTTATGGCCGTCTTATAGGGACTATGTTGGCTCCATACACTGTTCTTGATACTGGTTTATTTGCTCTCCTTGGAGCCGCATCATTCCTTGGTGGCACCATGAGAATGACTGTTTCTCTATGTGTCATACTTCTTGAACTTACTAATAATCTTCTCATGCTCCCATTGGTCATGTTGGTTCTCCTCATTTCTAAGTCTGTGGCTGATTCTTTCAACAAAGGTGTTTATGATCAGATTATGCGCCTCAAAGGATTGCCTTATATGGAGGCACATGCAGAACCATACATGAGAAATTTGGTTGCAGGGGATGTTGTTTCTGGTCCTCTCTTTACATTTTGTGGGGTTGAGAAAGTGGGGAATATTGTGCATGCATTGAAAGTGACAAGCCATCACGGGTTTCCAGTGATTGATGAGCCTCCTTTGACATATGCTCCTCAGTTGTGTGGATTGGTATTGAGGTCTCACCTACTGGTACTACTTCTCAAGCACAAGACATTATTCACTAGGGAAAAGGTGATGACAACTTCTACCGTTACGAACAAGTTTAAGGCGAACGATTTTGCAAAACCGGGTTTAGGAAGAGGAATAAGGGTGGATGATTTAGACATTTCAAAAGAGGAGATGGAAATGTTTGTTGATCTTCATCCAATCACTAATACATCTCCATATACTGTCGTTGAAACAATGTCTCTTGCAAAAGCTGCTCTTCTTTTTCGAGAGGTTGGCCTTAGACACTTGCTCGTTGTGCCCAAGACACCAGGAAGGCCTCCAATTGTTGGGATCTTGACAAGGCATGATTTCATGCCCGAGTATATCTTGGGACTATTCCCCCATTTGAATCACCAATAA 2271 0.4117 MERKGDIEERIERGMSEALLSGRRKIINNTSSQLAIVGSNICPIQSLDYEIIENDLLKQDWRSRRKVEIYQYVVLKWTLALLIGLITGIVGFLNNIGVENISGLKVLLTNNLMQQQKYEEAFAMYVGCNMILAVGAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVGAGFVVGKEGPMVHTGACIANLLGQGGSTKYGLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEATSWWRSALLWRTFFTNAVVAVVLRALIQFCEEGGGQCGLFGKGGLIMFDVNSAKPAYTTPDLLAVILFLGVIGGLMGSLYNYLIDKLLRTYSIINEKGPIFKILLVMIISFLTSCIRFGLPLLSKCVPCPGECPAPPTANFHDCPPNHYNDLSSLFFTTNDDAIRNLFIDGQNTGFQLSTLIIFFVSIYLLGIVTYGVAIPSGLFIPVILAGASYGRLIGTMLAPYTVLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADSFNKGVYDQIMRLKGLPYMEAHAEPYMRNLVAGDVVSGPLFTFCGVEKVGNIVHALKVTSHHGFPVIDEPPLTYAPQLCGLVLRSHLLVLLLKHKTLFTREKVMTTSTVTNKFKANDFAKPGLGRGIRVDDLDISKEEMEMFVDLHPITNTSPYTVVETMSLAKAALLFREVGLRHLLVVPKTPGRPPIVGILTRHDFMPEYILGLFPHLNHQ 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00018 756 CDD ClC_6_like 45 562 - -
Car01g00018 756 SUPERFAMILY CBS-domain pair 566 743 IPR046342 -
Car01g00018 756 ProSiteProfiles CBS domain profile. 691 752 IPR000644 -
Car01g00018 756 CDD CBS_pair_voltage-gated_CLC_euk_bac 565 744 - -
Car01g00018 756 SUPERFAMILY Clc chloride channel 54 564 IPR014743 -
Car01g00018 756 Pfam CBS domain 693 741 IPR000644 -
Car01g00018 756 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 9 755 - -
Car01g00018 756 Pfam Voltage gated chloride channel 135 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car01g00018 756 PRINTS Plant CLC chloride channel signature 413 429 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car01g00018 756 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car01g00018 756 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car01g00018 756 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car01g00018 756 Gene3D Clc chloride channel 68 562 - -
Car01g00018 756 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car01g00018 756 PRINTS Chloride channel signature 511 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car01g00018 756 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car01g00018 756 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car01g00018 756 PRINTS Chloride channel signature 461 481 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car01g00018 756 PRINTS Chloride channel signature 549 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car01g00018 756 PRINTS Chloride channel signature 493 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car01g00018 756 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 9 755 - -
Car01g00018 756 Gene3D - 563 743 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00018 Car-Chr1 195815 201394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00018 14 754 Ion Channels AT5G49890 73.698 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00018 K05016 - jre:108988922 1053.51