Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00016 ATGATGTCTGAAGAGGCTGGATCCATGTTGGTAGTCTACGATGATCCCTCTGACCAACACTCGCTGTCTTTGGGCGAAACAAGCAGCACAGAGGAGTCCCCTGGTGAAACCAGACACTCCATGGAATCAACTAACGATGCCATTCCGTACACTGGTCAAAGGTTTGCCACTCATGATGCAGCTTATGAATTCTATAGTGATTTTGCCAAGAGGTGTGGCTTCTCAATTAGACGTCACCGTACAGAGGGAAAAGATGGTGTTGGAAAAGGACTTACTAGGCGCTACTTTGTTTGTCACCGAGCTGGCAACACTCCTGTCAAATCATCAACTGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGGTGCGGTTGTCAGGCCTACATGCGGATAAGCAAAACAACAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCAGCATACAGAACTATCTCAGATGCTGACAAAAACCGAATCCTTATGTTTGCCAAAACAGGGATATCTGTTCATCAAATGATGAGGCTCATGGAGCTTGAGAAGTGTGTGGAACCAGGATATTTGCCTTTTACAGAAAAGGACGTAAGGAATTTACTCCAGTCGTTTAGAAAATTAGATCCAGAAGAAGAAAGCCTAGATTTGTTAAGAATGTGCAGAAATATTAAGGAGAAAGATTCTAATTTTAAATTTGAGCACACACTTGATGCAAACAACCATTTAGAAAATATTGCCTGGTCATATGCCTCATCGATCCAATTGTATGATATCTTtggtgatgccgtggtatttgatacaacacaccgtttgactgcgtttgacatgccgctggggatatgggttggaataaataattatggaatgccctgcttctttggctgtgtgctactgcgagatgaaaccgtCAGGTCATTTTCCTGGGCAATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATACTAACTGACCAAAATATTTGTCTAAAAGAAGCGCTATCTGCAGAAATGCCAACAACAAAACACGCTTTTTGCATATGGATGATAGTAGCCAAATTTCCATCTTGGTTCAATGCTGTTTTAGGAGAACGTTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAATCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGTCTGTTCTTTTGCGCTGCATTCCAATCGGCACATGGTTAATTTATACAGCTCTCGCTCACTTTGGGCATTGCCATATTTGAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCGAAGTCAATTAATGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGACTTGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTAGCCTCAAAACAGGAGCCCCCATGGAATCGCATGCTGCTACAGTCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAGCAACTAGTGTTGGCTGCACATTATGCATCTTTTTCAATTGAAGAAGGTTTTCTTGTGAGACATCACACGAAAGCTGAAGGAGGTCGCAAAGTTTATTGGTCCCCTCAGGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTAAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCAGATAGATATCTACCCATCCGATGGCGTCGTATCAGCATACCCTCTTCTAAGCTTCTTCAAAATGCAACTAACGATCATGCCGAAAGACTTAAGTTATTACAAAATATGGTTTCTTCTCTAATTACAGAATCTTCTAAGTCTAAAGAACGATTAGATATTGCAACAGAACAAGTTTCTATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATATTTCTACTATTAATAGGAATCTATGA 2043 0.3803 MMSEEAGSMLVVYDDPSDQHSLSLGETSSTEESPGETRHSMESTNDAIPYTGQRFATHDAAYEFYSDFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKSSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDSNFKFEHTLDANNHLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFALHSNRHMVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVSLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSIEEGFLVRHHTKAEGGRKVYWSPQEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISIPSSKLLQNATNDHAERLKLLQNMVSSLITESSKSKERLDIATEQVSILLSRIREQPISLQCARDISTINRNL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00016 680 MobiDBLite consensus disorder prediction 1 46 - -
Car01g00016 680 SMART 26again6 565 592 IPR006564 GO:0008270
Car01g00016 680 Pfam SWIM zinc finger 561 588 IPR007527 GO:0008270
Car01g00016 680 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 13 661 - -
Car01g00016 680 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 661 IPR031052 GO:0006355
Car01g00016 680 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Car01g00016 680 Pfam MULE transposase domain 279 371 IPR018289 -
Car01g00016 680 Pfam FAR1 DNA-binding domain 63 156 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00016 Car-Chr1 175129 178814 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Car01g00016 MULE 4.4e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00016 - - gmx:100810717 1301.96