Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00013 ATGGCTTCGCATCACATCTCAGCTACAAGCCGTGCAGGGGCAACTAATGATGCTATATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCTCGCGAAGGGGAGAGAGTTTATTACTTCCCACAAGGTCACATGGAACAGCTAGAGGCATCTATGAATCAGGCTTTAGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTTCAGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAACTGACCAAAGTGAGGTTACAAGCCCAGATGATCCTCTGCCTGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTCCGAAGACATGCAGATGATTGTCTGCCACCACTGGACATGACTCAGCAGCCACCATGGCAAGAATTGATTGCAACTGATTTGCATGGGCATGAATGGCATTTTCGACATATCTTTCGCGggcaacccaggcgccacttactgaccactgggtggagtgtctttgtcagttccaaaaaattagtggctggtgatgcatttatattcttaaggggtgaaaatggagagctcagagtcggagtcaggaggctcatgagacagcaaagcaatatgccatcttctgttatatctagccACAGCATGCATCTTGGTGTTCTTGCCACTGCATCTCATGCCATTTCCACCGGAACGTTGTTTTCTGTGTTTTACAAGCCAAGAACAAGCCGGTCAGAGTTTATTGTGAGTGTTAACAAGTATCTTGAAGCTCGAAATCATAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTTGAAGGTGATGAAGTACCTGAGAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCGCCTGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCGTCATCAATTTTGCGTCCAGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTGCAAACTCCCAGCCAACCCAAAGAAACAAGAGATCACGACCTCCTGTTTTACCTTCAACAATGCCTGATTCTTCTCCTCAAGGCATATGGAAATCTCCAGTTGAATCACCACCTTTCCCTTATCGTGACCTTCAACATGGACGAGACCTCTATCCATCACCAAGATTCAGCTCTACTGCAACTAGCTTTCTTGGTTTTGGTGGGAACGGCCCTGCTTCTAACAAGTCAATATATTGGTCTAGTAGAATGGAAAACTCTACAGAATCTTTTTCACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTCGGGATTCAGCTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACAGTTCCTTTGTCAGGAATGGTGGGTGATGATCGGTCTGTTCCGTCTTTGGATGCTGAGTCTGACCAACATTCTGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGACAAATCATGCCTACGGTCTCCTCAGGAGTCACAAAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGTTTTGATGGATATGAGGATTTGCTCAGGAAATTTGAAGAGATGTTTGACATTGAGGGTGAGCTCTGTGGAGCAACGAAAAAATGGCAGGTTGTTTACACTGACAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTGTAA 1845 0.4005 MASHHISATSRAGATNDAIYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQALEQQMPSFNLPSKILCKVVNIHLQAEPETDEVYAQITLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELIATDLHGHEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSPVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTQRNKRSRPPVLPSTMPDSSPQGIWKSPVESPPFPYRDLQHGRDLYPSPRFSSTATSFLGFGGNGPASNKSIYWSSRMENSTESFSPVALKESGEKRQGTGNGCRLFGIQLLENSNAEESLQTVPLSGMVGDDRSVPSLDAESDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKFEEMFDIEGELCGATKKWQVVYTDNEDDMMMVGDDPWL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00013 614 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Car01g00013 614 SUPERFAMILY CAD & PB1 domains 548 613 - -
Car01g00013 614 SUPERFAMILY DNA-binding pseudobarrel domain 113 253 IPR015300 -
Car01g00013 614 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 613 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car01g00013 614 Gene3D - 121 226 IPR015300 -
Car01g00013 614 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Car01g00013 614 SMART B3_2 124 226 IPR003340 GO:0003677
Car01g00013 614 CDD B3_DNA 122 224 IPR003340 GO:0003677
Car01g00013 614 MobiDBLite consensus disorder prediction 353 397 - -
Car01g00013 614 MobiDBLite consensus disorder prediction 357 374 - -
Car01g00013 614 Pfam AUX/IAA family 543 582 IPR033389 -
Car01g00013 614 Pfam Auxin response factor 250 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car01g00013 614 MobiDBLite consensus disorder prediction 492 523 - -
Car01g00013 614 PANTHER AUXIN RESPONSE FACTOR 1 16 613 - -
Car01g00013 614 Gene3D - 287 359 - -
Car01g00013 614 ProSiteProfiles PB1 domain profile. 546 614 IPR000270 GO:0005515
Car01g00013 614 MobiDBLite consensus disorder prediction 507 523 - -
Car01g00013 614 Gene3D - 541 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00013 Car-Chr1 155025 161400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00013 1 613 B3 DNA Binding Superfamily AT1G59750 72.006 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car01g00013 B3 2.6e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00013 K14486 - gmx:100793224 1140.56