Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g02454 ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACCAGTAAAAGGCCGCCTAGAGCCGGAAGCAATCTTAGAAACCAATCGCGCTCCGGTAAAAAATCTCAATACCGTATTCgtttagaagaaaaacaaaaattgcgTTTTCATTATGGTCTTTCAGAACGACAATTGCTTAAATACGTTTGTATCGCCAGAAAAGCTAAAGGGTCAACGGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAATATACTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCATAGACATGTTTTAGTTAATGGGCGTATAGTAGATATACCAAGTTATCGCTGCAAACCCCAAGATATTATTACAGCGAGGGATGACCAAAAGTCTCGAGCTCTGATTCAAAATTATCTTGATTCATCCCCCGTGAGGAATTACCAAAACATTTG 494 0.3947 MSRYRGPRFKKIRRLGALPGLTSKRPPRAGSNLRNQSRSGKKSQYRIRLEEKQKLRFHYGLSERQLLKYVCIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHVLVNGRIVDIPSYRCKPQDIITARDDQKSRALIQNYLDSSPVRNYQNI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g02454 164 ProSiteProfiles S4 RNA-binding domain profile. 90 151 - -
Bva14g02454 164 SMART s4_6 90 154 IPR002942 GO:0003723
Bva14g02454 164 Pfam S4 domain 90 137 IPR002942 GO:0003723
Bva14g02454 164 MobiDBLite consensus disorder prediction 16 44 - -
Bva14g02454 164 Pfam Ribosomal protein S4/S9 N-terminal domain 3 89 IPR001912 GO:0019843
Bva14g02454 164 Gene3D - 97 164 IPR036986 GO:0003723
Bva14g02454 164 SUPERFAMILY Alpha-L RNA-binding motif 3 161 - -
Bva14g02454 164 MobiDBLite consensus disorder prediction 28 42 - -
Bva14g02454 164 PANTHER 30S RIBOSOMAL PROTEIN S4, CHLOROPLASTIC 1 156 - -
Bva14g02454 164 CDD S4 90 149 - -
Bva14g02454 164 Hamap 30S ribosomal protein S4 [rpsD]. 1 164 IPR005709 GO:0003735|GO:0006412|GO:0015935
Bva14g02454 164 ProSitePatterns Ribosomal protein S4 signature. 88 112 IPR018079 GO:0019843
Bva14g02454 164 SMART Ribosomal_S4_2 3 89 IPR001912 GO:0019843
Bva14g02454 164 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 156 IPR022801 -
Bva14g02454 164 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 1 96 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g02454 87 129 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 46.512 1.42e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g02454 K02986 - nnu:10743831 288.885