Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g02314 atgagtgagAGGGTTAGTGGCAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTTGGCTTCATAACCCCTGATGACGGCGGCGAGGATCTCTTTGTTCATCAGTCTTCAATCAGATCTGATGGATATAGGAGCCTCGGCGATGGAGAAGCTGTTGAATTTTTGATCGAGTCTGATCCCGATGGCCGCACCAAGGCTGTTGATGTAACTGGCCCTCAGGAATCTTCGGTTCAGGGAAGCCGTCGTGGTGGTGGCGGCGGCGGTGGAGGAGGTAGGGGTTTCGGTGGTGGACGCGGGGGTGGCTATGGTGGTGGCGGCGGGGGATACGGTGGTGGACGAGGCGGAGGCGGAAGAGGTGGTGGCGGCTATGGGGGCGGTGGCGGTGGCTATGGGGGTGGTGGCGGTGGCGGTGGCTGCTTCAAGTGCGGTGAGGCGGGTCACTTGGCAAGGGATTGCTACCAAGGAGGCGGTGGCGGTGGCGGTAGGTATGGAggtggcggcggcggcggcggcgggaGCTGCTATACATGTGGGGAATCTGGGCATTTCGCAAGGGACTGCCCCAACAACGCTGGCTG 575 0.567 MSERVSGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSDGYRSLGDGEAVEFLIESDPDGRTKAVDVTGPQESSVQGSRRGGGGGGGGGRGFGGGRGGGYGGGGGGYGGGRGGGGRGGGGYGGGGGGYGGGGGGGGCFKCGEAGHLARDCYQGGGGGGGRYGGGGGGGGGSCYTCGESGHFARDCPNNAG 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g02314 191 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Bva14g02314 191 ProSiteProfiles Zinc finger CCHC-type profile. 173 188 IPR001878 GO:0003676|GO:0008270
Bva14g02314 191 Gene3D - 1 82 IPR012340 -
Bva14g02314 191 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Bva14g02314 191 PANTHER COLD SHOCK PROTEIN 1 3 189 - -
Bva14g02314 191 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 189 - -
Bva14g02314 191 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Bva14g02314 191 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Bva14g02314 191 SMART c2hcfinal6 172 188 IPR001878 GO:0003676|GO:0008270
Bva14g02314 191 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Bva14g02314 191 ProSiteProfiles Zinc finger CCHC-type profile. 138 151 IPR001878 GO:0003676|GO:0008270
Bva14g02314 191 SMART csp_8 6 71 IPR011129 GO:0003676
Bva14g02314 191 SUPERFAMILY Nucleic acid-binding proteins 2 69 IPR012340 -
Bva14g02314 191 Pfam Zinc knuckle 137 151 IPR001878 GO:0003676|GO:0008270
Bva14g02314 191 Pfam Zinc knuckle 172 188 IPR001878 GO:0003676|GO:0008270
Bva14g02314 191 MobiDBLite consensus disorder prediction 56 96 - -
Bva14g02314 191 Gene3D - 135 191 - -
Bva14g02314 191 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Bva14g02314 191 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Bva14g02314 191 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Bva14g02314 191 SUPERFAMILY Retrovirus zinc finger-like domains 128 189 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g02314 Bva-Chr14 19957224 19957799 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bva14g02314 CSD 1.5e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g02314 - - mnt:21407697 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g02314 14 19957224 19957799 Bva14g02314 14 19957224 19957799 ECH