Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g02260 ATGGATGCCGAGGAAGAGGAAACTCCGAGTAAACCTTTTTCTCCAGTCGAACAAGAATCCGTAACCACCTCGGGTGCACCAGAAGAGCTTCCAACAACTGCGCTACAATGCCAGTCCGAGCTGGAAGATTTACAACACGTTGGAGGAGAAGACGAGCCGGTGGTGCCACCACTGGGACCAGCCTCTGGTGAGGAGGAGAAGGGTATGATCGCAGGCGGGTTGGGTGAGGCCGTGGGTACCAGCACAAACATGGAAAATAGGGATAAGGCAGAAGTTGCCAATAACGAGGTCAAGGCAGTGGATGAAGTGGCAGAGACAACGGAAGTGGCGGTTGGAGCCGATATGGGTGAAGCGGTGAAAGAGGCAGTGGTGTCTGACGAGGAAGTTAAAAACGAGGGGTTAAAGATTGCTGATTTAACTAATGAGGGcttggaaatgaaaatgactAGCGAAGGGGAGGATACGGCCTATGTAGCAGGGGAGGAGATAGTTGAGGATAGCATAGCGTTGAAGATGGAGGCTGCAGAGGAGGGAAAAGATACAGGCATATCTGACCCATCGGCAAAGGAGAGGGATTTGGATGATCCGGTGAAGGATTCCGTAGATGGGATTGATATGGAAGATGAAACCATGGAGGCGACGGAGAGAGTGGACGAGAGGGGAGTGGCAGAGGATACCAATGTGGTTGACATGGCTGTGGAGACCAGAAAGATGGAAGAGAAGGTAGAGGAGGCTACCTTGCCAGATATGGTGATGGAGAAAGATGAGAAAGGGACGGAGGCAGCTGAAGTGAGAAATCTGGCTCATACTATAGATCAGGCAGAGGCAGATGGGCATAGCATGGATGATGAAATTAGGGAGGGAGATGACGAGGTGGAGGTGGCAGAGGAGCTGAACGTGGTTGGCTCAGGAGAGGAGGTAGATGCCGCTGGTGCTGAGGAAGAGGCTTGGGAGGCAGAAGAGACTGAGGTGCCAAATGAAGCTGATATGATGGAAGAGGAAGGGGATGCTGCTGACACAGCGGAAGATGCAGAGGCTACTGAGGACGCAGAGGAGATGGAGGAGCAAAGTAGAAGTATCAGTGGTGGGAAAAGAAAGCGAGGGAAGAATTCCAAGTCTACTGGGAGAGTTCCAACTAAAAAAAAGGTGGAAGAGGATGTTTGTTTCATTTGCTTTGACGGGGGTGAGCTTGTGCTTTGTGACCGCAGGGGATGCCCAAAGGCTTACCATCCTTCCTGTGTTAATCGTGACGAGGCATTCTTTCGGGCCAAGGGTAAATGGAATTGTGGTTGGCACATTTGCAGCAACTGTGAGAAAAATGCTTACTATATGTGCTTAACATGTACGTTCTCGTTGTGCAAGGGATGTATCAAAGATGCTGTCATCTTATTAGTTAGGGGAAACAAGGGTTTTTGTGAGACATGCATGAGAACTGTCATGTTGATTGAACGAAAGGAGCAGGGAAACATACAGATGGGACAAGTGGACTTTGATGACAAAAACAGCTGGGAGTATCTTTTCAAGGACTACTACACAGATTTAAAACGGAAGCTCTCTCTAACATTTGATGAGCTCACTCAAGCTAAAAACCCACGGAAAGGATCTGATATAATTCCTGCTAGACAGGAATCACCTGATGAACTTTATGATGCTAATAATGATAGAGGATCACATTCAGACAGCTCTTCTGAGAATGTTGAAATGACtaattcaaaaagaagaaaagccaAGAAAAGGATGAAATCTCGTTCCAAGGGAGGGGATTCACAAAGCACAGTGACAGCGATGGATACTGAAGGTTCATTTGCCGATGACAGCTCTGAGTGGGCGTCAAAAGAACTTTTGGAGTTTGTTATGCACATGCGAAATGGTGATGTCTCTGTTTTGTCTCAGTTTGATGTACAGGCTCTTTTgctagaatatataaaaagaaataaacttaGAGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAGAATTTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTACTGAAAGAGGATTCTCAGGCTGAAGATTTGCAGGGGAGTGTTGTTGATACAGAAGTTAGTCATTTAGAAGGTGATGGCAACTCCGATTCCCATCTGAAGGCAGGCAAAGATAAGAAACGTAAATCACGTAAAAAGGGTGATGAGAGAGGATCTCGAAACCTTGATGATTATGCAGCAATTgataatcataatattaatttaatttatctaagacGCAATTTGGTGGAGGATCTGCTTGAAGACACAGAAAAGTTCAATGATAAAGTTGTTGGGTCTTTTGTTAGAATAAGGATTTCTGGTAGTGGCCAGAAGCAGGACTTATATAGGCTGGTTCAAGTTGTAGGTACATGCAAATCATCTGAGCCATACAAAGTTGGTAAAAGGACAACAGATATCTTGCtagaaatcttaaatttaaacaagacAGAGATCGTATCAATTGATATTATCTCAAATCAAGAGTTCAAAGAGGATGAGTGCAAGCGTCTCCGTCAGAGCATAAAGTGTGGGCTCATAAATCGTCTGACAgtgGGTGACATTCAGGAGAAAGCATTGACACTCCAGGAAGTCAGAGTAAAAGATTGGCTAGAAACAGAGATACTGCGGCTAAGTCATCTTCGTGATAGGGCTAGTGAGAAAGGACGTAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGGTTTTGAAAACACCAGAGGAGCGTCAGCGTAGATTGGAAGAAATTCCAGAAATACGTGCAGACCCAAACATGGATCCAAGTTATGAGtctgaagaagatgaagatgaaatagATGATAAAAGACAAGAAAACTACATGAGACCCAGAGGAACTGCATTTAGTAGGAGGGGGAGAGAGGCAGTTTCTCCTGGAAGAGGCAGTTCCATTtcaaatgattcttggagTGGAGCAAGAAATTATCCTAATTTAAATCGTGAACTCAGCAGGAATTTATCCAATAAGGGTTTCTCAATGAAAGGTGATGATGTTCCTAATGCTAATGAGGTATTAGATGATGCTCAGTTGCTCCAGAGAAGAGACAGGGAAACACAACTGTCCAGTAGTTGGGAGAGGCAAAAGATATCATCAAGCTTTGAAAGTGGGGCTAGGAATGCCCAGCCTGTTGTATCATCTGAGtctttttctacttctttGTCAGAAGCTTCTGGTGTACCATCTTCTACAAGCATAGTTCCACCAGCtgtgaaaattaatgaaacagaaaagatgTGGAATTATCAAGATCCATCTGGAAAAGTTCAAGGACCATTTTCCATGGTGCAGTTACGTAAATGGAGTAACACTGGATATTTTCCAACCGAGCTGAGAATTTGGAGAACCACTGAGAAGCAGGATGAATCTATACTCTTGACAGATGCACTAGctggaaaattttctaaagatCCACCAGTGGTGGATAAAACCTTTGCAAAGGCTCAATTTGGGCACGATCTACACTCCTCTTTATACTCCATGAAACCACATTTGCCAGTACAAGGTACGGAAGGTCCAGTTGGAGGTAGAACAATATTTGATCAAAACAGTGGATCTCGGAAATCACTTGGGAGTATGTCTGCCCCTCTGACAGTTGAGGTACCTAAGAATCCCACTAACGGATGGGGTTCTGATGCTGGTATTAGACATGAGTCAACAAATCTTCCATCACCTACTCCTGCTCAAACTACCCCAGGCAAGACTAAGGGGCAGCGGGCTTTTGAAAATCAATGGTCACCTACTCCTGTCCAGTCAGCTGGCTCTCTCTTGGGAAATCAATTCCCAGGAAGTCATGGAGGTTTGCAAGCCCCTGCAGTAATGATCCCAGAGAATGTGGTGCCAAATGCTCAAAATTCACAACCCGGTATTAATTCTGCCCCCAAGTCAGAGACGGGTTTACTTCTGAGCTCCACTGATATTTCTCGAGTACATCCTCAAGCAGCTGCAGCAGCAGCACCTGTCATGGCTGATACGTCAACAAATACAGGTGTTGACATTAAACCTCCAGCTGTAAATATGCAAAACCTGGTTGTGACTAGTCATAATTCTCATGCTGAAACTCAAGGGTGGAGATCTGGTTTGGTTCCAAAGCCTGAAATTGCTGGCTCTATTCAGTTACGAGGGGGTGAACCACAGGCCTGGGGAGGTGCTCCGTCTCAGAGGTTGGAACCAATTAATCCTGCTACCATGCCAGCCCAGCCGCCTCCCCAGGGTCAATGGGGTGATGCTTCATCTGTCCAAAATGCTGCCTCATTTAGCACTGGAAATCCAACTGGGAATTTCCCTACACCAGGCTTTCCTTCTATGCCTACACCTGAGCCTTGGAGACCACCGTCTTCAAGTAATCAGTCAAGCAATCTACCTCCAGGACCACCAAATATACCTTGGGGCATGGGTGTTGCAGAAAATCAGAATACTGGTTGGGGGGTAATGCCAGGTAATCCGAATATTAGCTGGGGTGGGCCTCTACCTGCCAATATGAACATCAACTGGATGTCTGGTCAAGGGCCAGCCCCTGGAAATCCAAATCCGGGGTGGGTTGCCCCTAGTCAGGTGCCATCACAGGTAAATTCAGTCAGTTGGGCTGCACCTGGTCAAGGACCTCCGCAGGTAAATACAAATGCAGGTTGGGTTGTGCCAGGTCAAGGATTAGCACCTGGAAGTGCAAATCCTGGTTGGGCTGCATCTTCTGGGAATCCAGGCGTGTGGGGAAGTGAACAAAGTCATACTGGAGACAGGTTCCAAAACCAAGGGGATCCTGGTCCTAATGGTGGAGACTCCGCTTATGGTGGGGGAAAACCGTGGAACAGGCAATCCTCTTTTAACAATAGAGGGGGAGGAGGTTCCTCCAGGCCTCCTTTCATGGGGCAAAGGGGAATATGCTTATTCTATAAGAATGGGCACTGCAAGAAGGGATCTTCATGTGATTACATTCACAATTG 4991 0.4448 MDAEEEETPSKPFSPVEQESVTTSGAPEELPTTALQCQSELEDLQHVGGEDEPVVPPLGPASGEEEKGMIAGGLGEAVGTSTNMENRDKAEVANNEVKAVDEVAETTEVAVGADMGEAVKEAVVSDEEVKNEGLKIADLTNEGLEMKMTSEGEDTAYVAGEEIVEDSIALKMEAAEEGKDTGISDPSAKERDLDDPVKDSVDGIDMEDETMEATERVDERGVAEDTNVVDMAVETRKMEEKVEEATLPDMVMEKDEKGTEAAEVRNLAHTIDQAEADGHSMDDEIREGDDEVEVAEELNVVGSGEEVDAAGAEEEAWEAEETEVPNEADMMEEEGDAADTAEDAEATEDAEEMEEQSRSISGGKRKRGKNSKSTGRVPTKKKVEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHICSNCEKNAYYMCLTCTFSLCKGCIKDAVILLVRGNKGFCETCMRTVMLIERKEQGNIQMGQVDFDDKNSWEYLFKDYYTDLKRKLSLTFDELTQAKNPRKGSDIIPARQESPDELYDANNDRGSHSDSSSENVEMTNSKRRKAKKRMKSRSKGGDSQSTVTAMDTEGSFADDSSEWASKELLEFVMHMRNGDVSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEGDGNSDSHLKAGKDKKRKSRKKGDERGSRNLDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFNDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKSSEPYKVGKRTTDILLEILNLNKTEIVSIDIISNQEFKEDECKRLRQSIKCGLINRLTVGDIQEKALTLQEVRVKDWLETEILRLSHLRDRASEKGRRKELRECVEKLQVLKTPEERQRRLEEIPEIRADPNMDPSYESEEDEDEIDDKRQENYMRPRGTAFSRRGREAVSPGRGSSISNDSWSGARNYPNLNRELSRNLSNKGFSMKGDDVPNANEVLDDAQLLQRRDRETQLSSSWERQKISSSFESGARNAQPVVSSESFSTSLSEASGVPSSTSIVPPAVKINETEKMWNYQDPSGKVQGPFSMVQLRKWSNTGYFPTELRIWRTTEKQDESILLTDALAGKFSKDPPVVDKTFAKAQFGHDLHSSLYSMKPHLPVQGTEGPVGGRTIFDQNSGSRKSLGSMSAPLTVEVPKNPTNGWGSDAGIRHESTNLPSPTPAQTTPGKTKGQRAFENQWSPTPVQSAGSLLGNQFPGSHGGLQAPAVMIPENVVPNAQNSQPGINSAPKSETGLLLSSTDISRVHPQAAAAAAPVMADTSTNTGVDIKPPAVNMQNLVVTSHNSHAETQGWRSGLVPKPEIAGSIQLRGGEPQAWGGAPSQRLEPINPATMPAQPPPQGQWGDASSVQNAASFSTGNPTGNFPTPGFPSMPTPEPWRPPSSSNQSSNLPPGPPNIPWGMGVAENQNTGWGVMPGNPNISWGGPLPANMNINWMSGQGPAPGNPNPGWVAPSQVPSQVNSVSWAAPGQGPPQVNTNAGWVVPGQGLAPGSANPGWAASSGNPGVWGSEQSHTGDRFQNQGDPGPNGGDSAYGGGKPWNRQSSFNNRGGGGSSRPPFMGQRGICLFYKNGHCKKGSSCDYIHN 1663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1575 1605 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1 67 - -
Bva14g02260 1663 SMART rtf1 744 854 IPR004343 GO:0003677
Bva14g02260 1663 SMART swib_2 611 689 IPR019835 -
Bva14g02260 1663 SUPERFAMILY Plus3-like 745 874 IPR036128 GO:0003677
Bva14g02260 1663 MobiDBLite consensus disorder prediction 976 991 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 308 352 - -
Bva14g02260 1663 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 205 1663 - -
Bva14g02260 1663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 479 IPR013083 -
Bva14g02260 1663 SUPERFAMILY SWIB/MDM2 domain 609 685 IPR036885 -
Bva14g02260 1663 SUPERFAMILY GYF domain 1088 1146 IPR035445 -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1229 1256 - -
Bva14g02260 1663 SUPERFAMILY FYVE/PHD zinc finger 373 432 IPR011011 -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 919 991 - -
Bva14g02260 1663 Gene3D - 1094 1153 IPR035445 -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 531 604 - -
Bva14g02260 1663 ProSiteProfiles Plus3 domain profile. 744 877 IPR004343 GO:0003677
Bva14g02260 1663 MobiDBLite consensus disorder prediction 299 378 - -
Bva14g02260 1663 CDD GYF 1093 1148 IPR003169 GO:0005515
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1196 1221 - -
Bva14g02260 1663 PANTHER UNCHARACTERIZED 205 1663 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 919 938 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 13 40 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1446 1460 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1196 1256 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1390 1483 - -
Bva14g02260 1663 ProSiteProfiles GYF domain profile. 1093 1147 IPR003169 GO:0005515
Bva14g02260 1663 ProSiteProfiles SWIB/MDM2 domain profile. 603 686 IPR003121 -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 586 604 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1616 1630 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1421 1445 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 705 738 - -
Bva14g02260 1663 Gene3D - 746 875 IPR036128 GO:0003677
Bva14g02260 1663 SMART PHD_3 387 433 IPR001965 -
Bva14g02260 1663 Pfam Plus-3 domain 749 852 IPR004343 GO:0003677
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1568 1635 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 173 221 - -
Bva14g02260 1663 CDD SWIB-MDM2_like 609 684 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1040 1058 - -
Bva14g02260 1663 ProSiteProfiles Zinc finger PHD-type profile. 385 451 IPR019787 -
Bva14g02260 1663 Pfam SWIB/MDM2 domain 611 684 IPR003121 -
Bva14g02260 1663 SMART gyf_5 1094 1149 IPR003169 GO:0005515
Bva14g02260 1663 CDD Bbox1 433 459 - -
Bva14g02260 1663 Pfam GYF domain 1096 1138 IPR003169 GO:0005515
Bva14g02260 1663 CDD PHD5_NSD 387 432 - -
Bva14g02260 1663 Gene3D SWIB/MDM2 domain 600 694 IPR036885 -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 1029 1058 - -
Bva14g02260 1663 MobiDBLite consensus disorder prediction 173 204 - -
Bva14g02260 1663 ProSitePatterns Zinc finger PHD-type signature. 388 448 IPR019786 -
Bva14g02260 1663 ProSiteProfiles Zinc finger C3H1-type profile. 1638 1663 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g02260 Bva-Chr14 19327891 19338404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g02260 385 472 PHD Transcription Factor Family AT5G36670 31.000 1.74e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Bva14g02260 Plus-3 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g02260 - - gmx:100815079 1831.61