LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva14g02212	ATGGAGGAGGATGAGATTCAAGCACAACCATATAAATTCCCAAGACttggaaatggaagaaatgaCTCTAACAAGATAGGCTCTAAAGGGAACAATGAGCACTACccagatgatgaagaagatggaGAGCTTAGAAGACGAGGTGGAGGCAGTGATGGAAGCACAAATCGATTCCATTGGCACCATTCTTCAAGAATCATTAGGGTTTCAAGAGCATCTGGGGGGAAAGATAGGCACAGCAAGGTCATGACTTCGAAGGGTTTAAGAGACAGAAGGGTTAGGCTCTCAGTGACTACAGCTATTCAGTTCTATGACCTTCAAGATCGACTTGGTTATGACCAACCCAGTAAAGCTGTGGAGTGGTTGATTAAAGCAGCTGCAGATTCCATTGCGGAGCTTCCTTCTCTGAATAATACCTTCCCAGATACCCCAAAGCAACCAAGTGATGAAAAAAGGACAAATGCTGGAACGGAACAAGGCTTTGATTCAGCAGAAGCTGAGCTAGATGTTGAGGGGAATTACCAGCAGAATCAAAGCCAGAACCTTTCCTTGTCCAAATCTGCTTGTAGCAGCACCTCAGAGACAAGCAAAGGTTCTGGCTTGTCCCTCTCAAGGTCTGAAATTCGTGTGAACCGTAACAAGGCTCGTGAGAGGGCAAAGGTGAGAGtaaaggagaaggagaaagagaacgATTCTCGCATTGCCCATCACCAAAATGTGAATCCCATTTCTCAAACTGCTTCTTTTACTGAGCTTTTAACTGGTGGGATTGGCAATGTTGCTACAACCACTACAAGCCCAACTGGTCCAGCTCATCAGAATCACCATGAAGAGGctaattttttcaacaaaggAGGAAGACAGCAATGGCCTACAACAGTTCCAATGGACTATTTCAACTCGGGGCTTCTAGGACCTTCTTCTTCCAGATCCCACCATCATCAATCTTCATCTTCTGCCTTCTCAGGGCTAATCCAATTAGGAAACTCTTCTTTTCCCCATACAATGTCGGTTTCACCGTTCAATGTCACAGGTGAAAACCACTCCGATCAGCTGCAGCATTTCTCCTTCAACCCTGAGCATCTTATGCCAGTGGTTGCTTCTCAACCCAGCGGGAGCGACTACAATCTCAACTTCACCATCTCAACTTCAGGCCTTGCTGGCTACCACAGGGGGACCCTTCAGTCCAATTCTCCGTCGCTTTTGCCTCACCTACAGAGGTTTTCACCTATAGACGGAAACAATGTACCTTTCTTCATAGgagctgctgctgctgcagcTACAGCTGCTCCCACCATGGAGAATCACCATCAACATCAGTTCTCACCTGGATTTGATGGCCGCTTGCAACTCTGCTACAGCGACGGAAGCCGGCATTCAGAACACAAGGGCAAAGGAAAGAACTG	1406	0.436	MEEDEIQAQPYKFPRLGNGRNDSNKIGSKGNNEHYPDDEEDGELRRRGGGSDGSTNRFHWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADSIAELPSLNNTFPDTPKQPSDEKRTNAGTEQGFDSAEAELDVEGNYQQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRNKARERAKVRVKEKEKENDSRIAHHQNVNPISQTASFTELLTGGIGNVATTTTSPTGPAHQNHHEEANFFNKGGRQQWPTTVPMDYFNSGLLGPSSSRSHHHQSSSSAFSGLIQLGNSSFPHTMSVSPFNVTGENHSDQLQHFSFNPEHLMPVVASQPSGSDYNLNFTISTSGLAGYHRGTLQSNSPSLLPHLQRFSPIDGNNVPFFIGAAAAAATAAPTMENHHQHQFSPGFDGRLQLCYSDGSRHSEHKGKGKN	468

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva14g02212	468	MobiDBLite	consensus disorder prediction	209	235	-	-
Bva14g02212	468	MobiDBLite	consensus disorder prediction	134	156	-	-
Bva14g02212	468	Pfam	TCP family transcription factor	74	229	IPR017887	-
Bva14g02212	468	ProSiteProfiles	TCP domain profile.	75	133	IPR017887	-
Bva14g02212	468	PANTHER	TRANSCRIPTION FACTOR TCP24	1	468	-	-
Bva14g02212	468	MobiDBLite	consensus disorder prediction	1	63	-	-
Bva14g02212	468	PANTHER	TRANSCRIPTION FACTOR TCP4-RELATED	1	468	IPR005333	GO:0003700
Bva14g02212	468	MobiDBLite	consensus disorder prediction	174	236	-	-
Bva14g02212	468	MobiDBLite	consensus disorder prediction	31	52	-	-
Bva14g02212	468	MobiDBLite	consensus disorder prediction	174	208	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva14g02212	Bva-Chr14	18473125	18484350	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva14g02212	60	468	TCP Transcription Factor Family	AT4G18390	43.836	2.04e-80	252

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TCP	Bva14g02212		TCP	1.1e-40	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva14g02212	-		-	jre:109011061	543.888

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