Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g02141 ATGCAGAGCCAGCTTGTGTGTAATGGGTGTAGGAGCATTTTGCTTTACCCTAGAGGGGCCACTAATGTTTGTTGTGCATTGTGCAACACAATTACTCCTATTCCTCCACCTGGGATGGAAATGGCACAACTTATTTGTGGAGGTTGTAGGACATTGCTAATGTACACGCGTGGAGCTACAAGTGTGAGATGCTCCTGCTGTCACACCGTGAACCTTGCACCAGCATCTAATGTCGCCCATATCCACTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCATCAGTGAAATGTGCAGTCTGTCACTATATCACTAATGTTGGTatgACAAATGGAAGGCTTCCTATTCCCGTCCATAGGCCTAATGGAACAACCAACGCTGGAACAGCACCTTCTACTTCAACATCGATGCCTCACTCTCAGAGCCAAACTGTCGTGATAGAAAATCCTATGTCTTTTGATGCAAGTGGGAAATTGGTGAGCAACGTAGTCGTCGGCATCACAACTGATAAGAAATA 527 0.4611 MQSQLVCNGCRSILLYPRGATNVCCALCNTITPIPPPGMEMAQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPASNVAHIHCGNCRTTLMYPYGAPSVKCAVCHYITNVGMTNGRLPIPVHRPNGTTNAGTAPSTSTSMPHSQSQTVVIENPMSFDASGKLVSNVVVGITTDKK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g02141 175 MobiDBLite consensus disorder prediction 123 142 - -
Bva14g02141 175 PANTHER LSD1-LIKE PROTEIN 1 173 - -
Bva14g02141 175 MobiDBLite consensus disorder prediction 125 142 - -
Bva14g02141 175 Pfam LSD1 zinc finger 46 70 IPR005735 -
Bva14g02141 175 Pfam LSD1 zinc finger 7 31 IPR005735 -
Bva14g02141 175 Pfam LSD1 zinc finger 83 107 IPR005735 -
Bva14g02141 175 PANTHER PROTEIN LSD1 1 173 IPR040319 -
Bva14g02141 175 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Bva14g02141 175 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 32 IPR005735 -
Bva14g02141 175 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 80 109 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g02141 Bva-Chr14 15408384 15413776 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Bva14g02141 zf-LSD1 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g02141 - - gmx:100776394 332.798