Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g02134 ATGTACACCCGTGGAGCCACAAGTGTGAGATGCTCCTGCTGTCATACTGTGAACCTTGCACCAGCATCTAATGTCGCCCATATCCACTGTGGGAACTGCCGGACAACGCTCATGTATCCATGTGGAGCTCCATCGGTGAAATGTGCAGTCTGTCACTATATTACTAATGTCAGTatgACAAATGGAAGGCTTCCTATTTCCGTCCATAGGCCTAATGGAACAACCAACTCTGGAACAGCACCTTCTACTTCAACATCGATGCCTCACTCTCAGAGCCAAACCGTAGTGATAGAAAATCCTATGTCTTTTGATGCAAGTGGGAAATTGGTGAGCAACGTAGTCGTTGGCGTCACAACCGATAAGAAATA 368 0.4647 MYTRGATSVRCSCCHTVNLAPASNVAHIHCGNCRTTLMYPCGAPSVKCAVCHYITNVSMTNGRLPISVHRPNGTTNSGTAPSTSTSMPHSQSQTVVIENPMSFDASGKLVSNVVVGVTTDKK 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g02134 122 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 56 IPR005735 -
Bva14g02134 122 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 1 19 IPR005735 -
Bva14g02134 122 Pfam LSD1 zinc finger 30 54 IPR005735 -
Bva14g02134 122 Pfam LSD1 zinc finger 1 17 IPR005735 -
Bva14g02134 122 MobiDBLite consensus disorder prediction 64 92 - -
Bva14g02134 122 PANTHER PROTEIN LSD1 1 120 IPR040319 -
Bva14g02134 122 PANTHER LSD1-LIKE PROTEIN 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g02134 Bva-Chr14 15346109 15352343 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Bva14g02134 zf-LSD1 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g02134 - - gmx:100776394 221.861