Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01964 ATGGGaatgaaagaaggaagaagaagtaataACATCTGCACTTATTGGCTTGCAGGGAAATGCCGAAGAAACCCGTGTAAGTTCTTGCACGGTGAACCTCAGCCACAACGCTCTGAGACTAAAAGGTCCATGGTTTGGAAGAACTCCAATGTGAAAAACTCCAAGGTTTTGCTTTCTCCTGCTACTAAAGTAACTGGGTCTGTCTCAAAAGAGCTTAATTCAATTCGGAAGGAGGAAATCTGCAAGTTTTGGCTTCTGGGCAAGTGTAATTATGGCGATAGATGCAGAAAGTTGCATTCTTGGTTCAAAGGGAAAGGATTCTCTATGTTGGCGAGACTTGAAGGCCACATGAAGCCAATCACTGGAATTTCCCTTCCTTTGGGTGATAACAAGCTCTATTCAGCAAGTTCGGATGGCAGTGTGCGAATTTGGGATTGCCATTCTGCCCAATGCATAAGAGAATCAAAAACTAGCCATGAATTTGGCCCATTGATCAGTGAAGGCTCATGGGTATTTTTGGGCATGACTAATGTTGTTAAAGCTTGGAACTTCCAGACTGGTATGGAAGTTAGTCTCAATGGTGGACCCTTTGGGAAGGTGTATGCTTTGGCTACTAGTGATGATATGCTTTTTGCGGCAGCACAAAGTGGTGGAATTTGGGTTTGGAAGGCATGTGGTTCTGATAAAAACCCATTTGAATTTGTTGGAGTTTTGAAGGGTCATACAAGTACTGTTGTGTCTCTATTTGTTGGATGTGGAGGGAAGAAGTTGTTTTCTGGCTCTATGGACAAAACCATTAGGTTTTGGGACCTTGAAAGATTGGTATGCATTGACACATTGGTTGGGCATAGTGATGTGGTTATGTCCCTTCTTTGCTGGGATGACTTTCTGATTTCAGGTTCATTGGATCGTGAGATCAAAATTTGGGCAATGACAGAAGAAGGAAATTTAAAGGTAACATATACACATAAGGTAAGCCATGGGATTCTTGCACTAGGTGGAATGATTGATTCAAAGGAAAAACCAGTTTTGTTTTGCTCCTGCGATGACAGTTCTGTGAGAATATATGAATTGCCTTCATTTCTAGAGAGGGGAAGGTTGTTTGCTAGAGAAGAGGTTAGAGTTATTGAGATTGGCCCTAATGGGCTCTTCTTCAATGGGGATGCCGCTGGTCTTGTGACAGCATGGAAGTGGACAGATGAACCACAGATAGATTA 1217 0.4182 MGMKEGRRSNNICTYWLAGKCRRNPCKFLHGEPQPQRSETKRSMVWKNSNVKNSKVLLSPATKVTGSVSKELNSIRKEEICKFWLLGKCNYGDRCRKLHSWFKGKGFSMLARLEGHMKPITGISLPLGDNKLYSASSDGSVRIWDCHSAQCIRESKTSHEFGPLISEGSWVFLGMTNVVKAWNFQTGMEVSLNGGPFGKVYALATSDDMLFAAAQSGGIWVWKACGSDKNPFEFVGVLKGHTSTVVSLFVGCGGKKLFSGSMDKTIRFWDLERLVCIDTLVGHSDVVMSLLCWDDFLISGSLDREIKIWAMTEEGNLKVTYTHKVSHGILALGGMIDSKEKPVLFCSCDDSSVRIYELPSFLERGRLFAREEVRVIEIGPNGLFFNGDAAGLVTAWKWTDEPQID 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01964 405 Gene3D - 167 405 IPR015943 GO:0005515
Bva14g01964 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 279 IPR001680 GO:0005515
Bva14g01964 405 Gene3D - 6 99 - -
Bva14g01964 405 ProSitePatterns Trp-Asp (WD) repeats signature. 257 271 IPR019775 -
Bva14g01964 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 145 - -
Bva14g01964 405 SMART c3hfinal6 75 101 IPR000571 GO:0046872
Bva14g01964 405 SMART c3hfinal6 8 32 IPR000571 GO:0046872
Bva14g01964 405 ProSiteProfiles Zinc finger C3H1-type profile. 75 102 IPR000571 GO:0046872
Bva14g01964 405 SUPERFAMILY CCCH zinc finger 76 100 IPR036855 GO:0046872
Bva14g01964 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 272 - -
Bva14g01964 405 PRINTS G protein beta WD-40 repeat signature 132 146 IPR020472 -
Bva14g01964 405 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Bva14g01964 405 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Bva14g01964 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 99 IPR000571 GO:0046872
Bva14g01964 405 SUPERFAMILY WD40 repeat-like 103 396 IPR036322 GO:0005515
Bva14g01964 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 319 IPR001680 GO:0005515
Bva14g01964 405 PANTHER - 7 402 IPR044715 -
Bva14g01964 405 SMART WD40_4 106 145 IPR001680 GO:0005515
Bva14g01964 405 SMART WD40_4 231 270 IPR001680 GO:0005515
Bva14g01964 405 SMART WD40_4 316 357 IPR001680 GO:0005515
Bva14g01964 405 SMART WD40_4 186 223 IPR001680 GO:0005515
Bva14g01964 405 SMART WD40_4 273 310 IPR001680 GO:0005515
Bva14g01964 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 154 IPR001680 GO:0005515
Bva14g01964 405 ProSiteProfiles Zinc finger C3H1-type profile. 7 33 IPR000571 GO:0046872
Bva14g01964 405 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 7 402 - -
Bva14g01964 405 Pfam WD domain, G-beta repeat 234 270 IPR001680 GO:0005515
Bva14g01964 405 Pfam WD domain, G-beta repeat 276 309 IPR001680 GO:0005515
Bva14g01964 405 Pfam WD domain, G-beta repeat 111 145 IPR001680 GO:0005515
Bva14g01964 405 Gene3D - 100 166 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01964 Bva-Chr14 12169398 12170615 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01964 238 323 Miscellaneous Gene Families AT5G08390 31.818 6.22e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva14g01964 WD40 8.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01964 - - csin:114279945 415.616