Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01957 ATGGGCAGAGAACTCAAGTGTCCTATTTGCTGGAGTTTACCGGATTCTGCAGTTTCACTTACATGCAATCATGTATTCTGCAACTCATGCATTGAGAAATCAATGAAGTCAGCTTCTAATTGTCCTGTATGTAAAGTGCCCTTCCGGCGTAGAGAGGTTCGTCCTGCTCCTCTCATGGATAACTTGAATGCACCTGATACCAAATTATCAGATGGAGAAAAGCAATGTGAAGGTGATGCCAACTGTAGTGAGAAGGAGGCTAGTGGAACTCATCAAGATCAGtcccaggaaaaaaaaaaatacctcaaGGGAAAGGGGTCGAAGAAAAAGACTGGTACCAGCAAGAGAAGTTCTGCTACTGGCTCTGTAAAGCCTTCTTTTCCAGCAAAGAAAAGGGTTCAGGTGACACAAAGCCCTCTTTCAGAAACTCCATTAACGATTGCAAAGTTGGGAGGTTCTCTAAATGACTTTAATAAGGAGGCAACACGAGAGGATTCAGACATGTCAAAAGAAGAGCCTCTTAggagagacaaaaaatttgttttatctcCTTTCTTTTGGTTGAGGGAGAAAGACGATGAAGACTCGAGTCAGGAAACTGTTGGGGATGAACCTATTGATACATCAACACCAAATGCTCCTTCCTTCAGTGATCTGAAGGACTCTGATGATGAAGGCCCTTCCAAAGTTGACGATACTGGTGAACTTGATGATGTAAACCAAGAAATCAACTCGGTAGAAGTCCCACAGGTGCTGGAAGCAAATAAGCTAAGTTCTGTGAAAACCAAATTTGAGCATCTCAAAGAAGGAAACGGTTTTGCTGATGTATTACATCCAAGTGCCAATTCTCCTCAAATTAAAGGCTCTGATGATCAAAATGGGGTGAAGAAGTCTAGAAAGAGAGGCAGGAAGCCTAGTGAAAAAGCCCATAAAGTGCAAACTGCGAGGCAGAGTGATCAAGTCAACGGAATTGATGTTGAGTTGAACGGATTGTCAAAAGTCAATCACGAGCTAACAGAGAATGGaaacatttcttcaaattggGAGAGGGCGAATGGAAGGGGCAAGAGTGTTTGTTCCAATACCAGTACAAAACCAGCACCACAAACTTCTCAAGCTGCCTTGGATACATCTGGAGTTCTGATTAATAGTGAAGTAAATCTGCTTGACAATTTATCTGCTTTGCCATGTGAACAAGAACTTAGGAAGGATTCTATTCTGAGGAATGCTGATAAAAACCAGAGGAAAAGGTCTGGGAAACGAAAGCTGGACCATGTGGAAAACATACTTGAATA 1295 0.4039 MGRELKCPICWSLPDSAVSLTCNHVFCNSCIEKSMKSASNCPVCKVPFRRREVRPAPLMDNLNAPDTKLSDGEKQCEGDANCSEKEASGTHQDQSQEKKKYLKGKGSKKKTGTSKRSSATGSVKPSFPAKKRVQVTQSPLSETPLTIAKLGGSLNDFNKEATREDSDMSKEEPLRRDKKFVLSPFFWLREKDDEDSSQETVGDEPIDTSTPNAPSFSDLKDSDDEGPSKVDDTGELDDVNQEINSVEVPQVLEANKLSSVKTKFEHLKEGNGFADVLHPSANSPQIKGSDDQNGVKKSRKRGRKPSEKAHKVQTARQSDQVNGIDVELNGLSKVNHELTENGNISSNWERANGRGKSVCSNTSTKPAPQTSQAALDTSGVLINSEVNLLDNLSALPCEQELRKDSILRNADKNQRKRSGKRKLDHVENILE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01957 431 MobiDBLite consensus disorder prediction 158 175 - -
Bva14g01957 431 Pfam Zinc finger, C3HC4 type (RING finger) 4 49 - -
Bva14g01957 431 MobiDBLite consensus disorder prediction 191 255 - -
Bva14g01957 431 SMART ring_2 7 44 IPR001841 -
Bva14g01957 431 CDD RING-HC 7 44 - -
Bva14g01957 431 ProSitePatterns Zinc finger RING-type signature. 22 31 IPR017907 -
Bva14g01957 431 MobiDBLite consensus disorder prediction 156 175 - -
Bva14g01957 431 MobiDBLite consensus disorder prediction 273 318 - -
Bva14g01957 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 105 IPR013083 -
Bva14g01957 431 MobiDBLite consensus disorder prediction 218 236 - -
Bva14g01957 431 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 1 421 IPR031099 GO:0006281|GO:0006974
Bva14g01957 431 MobiDBLite consensus disorder prediction 239 255 - -
Bva14g01957 431 MobiDBLite consensus disorder prediction 70 101 - -
Bva14g01957 431 MobiDBLite consensus disorder prediction 344 373 - -
Bva14g01957 431 MobiDBLite consensus disorder prediction 411 431 - -
Bva14g01957 431 MobiDBLite consensus disorder prediction 202 217 - -
Bva14g01957 431 ProSiteProfiles Zinc finger RING-type profile. 7 45 IPR001841 -
Bva14g01957 431 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 1 421 - -
Bva14g01957 431 MobiDBLite consensus disorder prediction 57 147 - -
Bva14g01957 431 SUPERFAMILY RING/U-box 3 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01957 Bva-Chr14 12043611 12052958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01957 2 73 RAD5 or RAD16-like Gene Family AT5G05130 32.877 5.30e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01957 K10683 - gmx:100804958 331.257