Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01955 ATgggaatgaaagaaagaagaagaaataacatcTGCACTTATTGGCTCGCAGGGAAATGCCGAAGAAACCCGTGTAAGTTCTTGCACGGTGAACCTCAGCCACAACGCCCTGAGCGTAAAAGGTCTATGGTTTGGAAGAACTCCAATGTGAAAAACTCCAAGGTTTTGCTTTCTCCTGCTACTAAAGTAACTGGGTCTGTCTCAAAAGAGCTTAATTCAATTCAGAAGGAGGAAATCTGCAAGTTTTGGCTTCTGGGCAAGTGTAATTATGGCGATAGATGCAGAAAGTTGCATTCTTGGTTCAAAGGGAAAGGATTCTCTATGTTGGGGAGACTTGAAGGCCACATGAAGCCAATCACTGGAATTTCCCTTCCTTTGGGTGATACCAAGCTCTATTCAGCAAGTTCGGATGGCAGTGTGCGAATTTGGGATTGCCATTCTGCCCAATGCATAAGAGAATCAAACACTAGCCATGAATTTGGCCCATTGATCAGTGAAGGCTCATGGGTATTTTTGGGCATGACTAATGTTGTTAAAGCTTGGAACTTCCAGACTGGTATGGAAGTTAGTCTGAATGGTGGACCCTTTGGGAAGGTGTATGCTTTGGCTACTAGTGATGATATGCTTTTTGGGGCAACACAAAGTGGTGGAATTTGGGTTTGGAAGGCATGTGGTTCTGATAAAAACCCATTTGAATTTGTTGGAGTTTTGAAGGGTCATACAAGTACTGTTGTGTCTCTATTTGTTGGATGTGGAGGGAAGAAGTTGTTTTCTGGCTCTATGGACAAAACCATTAGGTTTTGGGACCTTGAAAGATTGGTATGCATTGACACATTGGTTGGGCATAGTGATGTGGTTATGTCCCTTCTTTGCTGGGATAACTTTCTGATTTCAGGCTCATTGGATCGTGAGATCAAAATTTGGGCAATGACAGAAGAAGGCAATTTAAAGGTAACATATACACATAAGGTAAGCCATGGGATTCTTGCACTAGGTGGAATGACTGACTCAAAGGAAAAACCAGTTTTGTTTTGCTCCTGCAATGACATTTCTGTGAGAATATATGAATTGCCTTCATTTCTAGAGAGGGGAAGATTGTTTGCTAGAGAAGAGGTTAGAGTTATTGAGATTGGCCCTAATGGGCTCTTCTTCACTGGGGATGCTGCTGGTCTTGTGACAGCATGGAAGTGGATAGATGAACCACAGATAGATTA 1214 0.416 MGMKERRRNNICTYWLAGKCRRNPCKFLHGEPQPQRPERKRSMVWKNSNVKNSKVLLSPATKVTGSVSKELNSIQKEEICKFWLLGKCNYGDRCRKLHSWFKGKGFSMLGRLEGHMKPITGISLPLGDTKLYSASSDGSVRIWDCHSAQCIRESNTSHEFGPLISEGSWVFLGMTNVVKAWNFQTGMEVSLNGGPFGKVYALATSDDMLFGATQSGGIWVWKACGSDKNPFEFVGVLKGHTSTVVSLFVGCGGKKLFSGSMDKTIRFWDLERLVCIDTLVGHSDVVMSLLCWDNFLISGSLDREIKIWAMTEEGNLKVTYTHKVSHGILALGGMTDSKEKPVLFCSCNDISVRIYELPSFLERGRLFAREEVRVIEIGPNGLFFTGDAAGLVTAWKWIDEPQID 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01955 404 Gene3D - 168 404 IPR015943 GO:0005515
Bva14g01955 404 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Bva14g01955 404 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Bva14g01955 404 PRINTS G protein beta WD-40 repeat signature 131 145 IPR020472 -
Bva14g01955 404 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Bva14g01955 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 271 - -
Bva14g01955 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 75 98 IPR000571 GO:0046872
Bva14g01955 404 Gene3D - 4 98 - -
Bva14g01955 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Bva14g01955 404 SMART WD40_4 272 309 IPR001680 GO:0005515
Bva14g01955 404 SMART WD40_4 359 396 IPR001680 GO:0005515
Bva14g01955 404 SMART WD40_4 185 222 IPR001680 GO:0005515
Bva14g01955 404 SMART WD40_4 105 144 IPR001680 GO:0005515
Bva14g01955 404 SMART WD40_4 230 269 IPR001680 GO:0005515
Bva14g01955 404 PANTHER - 4 401 IPR044715 -
Bva14g01955 404 Gene3D - 99 167 IPR015943 GO:0005515
Bva14g01955 404 SUPERFAMILY CCCH zinc finger 76 99 IPR036855 GO:0046872
Bva14g01955 404 ProSitePatterns Trp-Asp (WD) repeats signature. 256 270 IPR019775 -
Bva14g01955 404 SMART c3hfinal6 74 100 IPR000571 GO:0046872
Bva14g01955 404 SMART c3hfinal6 6 31 IPR000571 GO:0046872
Bva14g01955 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 112 144 - -
Bva14g01955 404 SUPERFAMILY WD40 repeat-like 106 399 IPR036322 GO:0005515
Bva14g01955 404 Pfam WD domain, G-beta repeat 233 269 IPR001680 GO:0005515
Bva14g01955 404 Pfam WD domain, G-beta repeat 109 144 IPR001680 GO:0005515
Bva14g01955 404 Pfam WD domain, G-beta repeat 275 308 IPR001680 GO:0005515
Bva14g01955 404 ProSiteProfiles Zinc finger C3H1-type profile. 74 101 IPR000571 GO:0046872
Bva14g01955 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 112 153 IPR001680 GO:0005515
Bva14g01955 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 318 IPR001680 GO:0005515
Bva14g01955 404 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 4 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01955 Bva-Chr14 12035748 12036962 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01955 237 322 Miscellaneous Gene Families AT5G08390 31.818 1.01e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva14g01955 WD40 8.5e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01955 - - csin:114279945 420.624