LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva14g01936	ATGTATGAAAGATCATTTCGACCTGCAAATGTTGATGAATGTAGAACGATCAAGCCGTGCAATATGACATGCCACAACTTTGATGGCGGTTATAATTGCTCTTGTCCACATGGATATGAAGGAGACGGAAAGAAAGATGGATCTGGCTGCTTTTCAAAGGAGAAACCTAAGAAAGATCCTGTCATTGTCATAGCACTTGAAACAGAAGCTCCCATATTAGTCTATGAGTTTGTGTCCAATGGCAACCTCTATGATTGTATTGACCCATTAAAGAATGCAACTCCACTTCCTTGGGAGAAAAGGTTAAGCATAGCTGAAGAAACTGCTGAGGCTGTTTCATATTTGCATTCAATTGCTTCTATTCCGATAATCCACCGAGATATAAAATCTAGCAACATACTTTTAGACAACAACGACAAAGTGAAAGTGTCTGATTTTGGAGCTTCAAGGCTGGTACCTCTTGATGAAACTTATGTTTCCACTATTGTGCAAGGCACTCCTAGATACTTGGACCCAAAATACCTTCAAATAAGTCAATTGAATGAAAAGAGTGgtgtttatagttttggagttGTAATTATCAAGCTGCTTACCGGTGACAAAGCAAGCTA	611	0.3797	MYERSFRPANVDECRTIKPCNMTCHNFDGGYNCSCPHGYEGDGKKDGSGCFSKEKPKKDPVIVIALETEAPILVYEFVSNGNLYDCIDPLKNATPLPWEKRLSIAEETAEAVSYLHSIASIPIIHRDIKSSNILLDNNDKVKVSDFGASRLVPLDETYVSTIVQGTPRYLDPKYLQISQLNEKSGVYSFGVVIIKLLTGDKAS	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva14g01936	203	Pfam	Calcium-binding EGF domain	11	47	IPR001881	GO:0005509
	Bva14g01936	203	Pfam	Protein kinase domain	69	200	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva14g01936	203	Gene3D	Transferase(Phosphotransferase) domain 1	58	203	-	-
	Bva14g01936	203	SMART	serkin_6	40	203	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva14g01936	203	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	123	135	IPR008271	GO:0004672\|GO:0006468
	Bva14g01936	203	Gene3D	Laminin	11	52	-	-
	Bva14g01936	203	ProSiteProfiles	Protein kinase domain profile.	1	203	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva14g01936	203	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	24	35	IPR000152	-
	Bva14g01936	203	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED	8	55	-	-
	Bva14g01936	203	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED	65	202	-	-
	Bva14g01936	203	SUPERFAMILY	Protein kinase-like (PK-like)	69	200	IPR011009	-
	Bva14g01936	203	ProSiteProfiles	EGF-like domain profile.	10	42	IPR000742	-
	Bva14g01936	203	SUPERFAMILY	EGF/Laminin	11	44	-	-
	Bva14g01936	203	ProSitePatterns	Calcium-binding EGF-like domain signature.	10	33	IPR018097	GO:0005509
	Bva14g01936	203	CDD	EGF_CA	10	42	-	-
	Bva14g01936	203	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	8	55	IPR045274	GO:0007166
	Bva14g01936	203	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	65	202	IPR045274	GO:0007166
	Bva14g01936	203	SMART	egfca_6	10	51	IPR001881	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva14g01936	Bva-Chr14	11762980	11764399	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva14g01936	66	202	Receptor kinase-like Gene Family	AT1G21240	59.124	1.89e-50	168

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Bva14g01936		Pkinase	2.8e-26	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva14g01936	-		-	vvi:100252247	186.422