Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01789 ATGAGAGAAAGGGGTGGCGCTGGAGCTTTAGCTCTAGCATTCTCTAACTTAGCCAAAAATACAATCCAAATGGTTaccttgtctttcttcttcatcttcttcttattcatctttctcttccttccttACACAACAAGCAATCCGATTTGTGATTCTTACATAATCTGTGGATCTGGGTCTCCTAACATTCAGTTCCCTTTCTGGTTGAGAGACAGGAATCCAGGCCAACGTTGCGGGTACCCGGGATTCGAGCTTTCCTGCGACAATGATAAGGCTTTACTCAACATCCCAAATTCTGGAAACTTTGTTGTCACAAGCATATCCTCCGAAGATATTCTCATTGATGACACAGAAGGTTGCTTGCCAAGACGTTTTCTTACACAAAATGTAAGCCTCACAGGTACACCATTCAAATGGGGAGAGGATTATACTCTTCAAAACTTCATCGTTCTCAAATGCAACAGCTCGATAGAGTTGCTTGCATTAGATTTAATTCGTGTGCCTTGCCCAAGCAGCTTCTACAATAGTCATTTTATTGCTTTGTTCCCCAATAATAAAGACTACAAAACGGATGAGAGGATGAATTCATCATGTCAAATGATTTCTCCAGCTTGGATTCCATGGTCGAATTCGAGACCTTGGGGGATTGACGGTGGAATCGAGTTGACATGGAGTGAACCAGCAGATTGCAGAAACTGTAATCCATATTATGAACAATGTGGGTTCTTGGGGAATACTGGTCTCAACGTTACTTGTTACCCAAGGAATACTTCtcgaaataaaaaagttgCAGTCGGAGGTAAGAGTTCCATTGAAATCCTTCAATGGGAGCCACATGACGCGTCAAATTTGGGGATATATAGACAGCAGCCACAAGCAAGTTTAGAGCTTCCAACCTCAAATGCACCACAAACCCCCATTTTTGCCGTTGCAGCAGTGGGGCTTGATAGGTCAATCATAGAAACATACCCAAAAACTGAGGTCAGTGAAAGTGGAGCATTGCCTGATCCAAACGACAACGTTTGCTCCATATGTCTATCTGAATACCAGCCAAAGGAGATACTAAGGAGCATACCAAATTGCAATCACTATTTCCACTTGAATTGTTTAGATGAGTGGCTCAGGATGAATGCTACATGCCCCTTGTGCCGAAACTTACCTGGGAGATCTTTGTCTGTATTTTCAACATCATA 1193 0.404 MRERGGAGALALAFSNLAKNTIQMVTLSFFFIFFLFIFLFLPYTTSNPICDSYIICGSGSPNIQFPFWLRDRNPGQRCGYPGFELSCDNDKALLNIPNSGNFVVTSISSEDILIDDTEGCLPRRFLTQNVSLTGTPFKWGEDYTLQNFIVLKCNSSIELLALDLIRVPCPSSFYNSHFIALFPNNKDYKTDERMNSSCQMISPAWIPWSNSRPWGIDGGIELTWSEPADCRNCNPYYEQCGFLGNTGLNVTCYPRNTSRNKKVAVGGKSSIEILQWEPHDASNLGIYRQQPQASLELPTSNAPQTPIFAVAAVGLDRSIIETYPKTEVSESGALPDPNDNVCSICLSEYQPKEILRSIPNCNHYFHLNCLDEWLRMNATCPLCRNLPGRSLSVFSTS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01789 397 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Bva14g01789 397 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 30 389 - -
Bva14g01789 397 SUPERFAMILY RING/U-box 336 386 - -
Bva14g01789 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 388 IPR013083 -
Bva14g01789 397 Pfam Wall-associated receptor kinase galacturonan-binding 50 111 IPR025287 GO:0030247
Bva14g01789 397 CDD RING-H2_PA-TM-RING 341 384 - -
Bva14g01789 397 Pfam Ring finger domain 341 384 IPR001841 -
Bva14g01789 397 SMART ring_2 342 383 IPR001841 -
Bva14g01789 397 Coils Coil 397 397 - -
Bva14g01789 397 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 30 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01789 Bva-Chr14 10099780 10101336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01789 56 388 C3H Transcription Factor Family AT2G46495 33.333 1.03e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01789 - - lja:Lj4g3v3004070.1 241.506