Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01630 ATGGCTTCTCATGATAAAGCTTTCGATGGAGCTGAGCTCCCCTCTGGGCGAGAATGGCAAACGGTGCGGACTGTAGATGTTATTGTACTGGGCACTGAAACGATGATGTCTATAAGAGGGCGTCTTGTTCTTCTAGTCTTAGCCAATCAAAACCATCAAAGAAAATCTCAAAGGCGTGATTTCAGTTCTATCGACAAGAATATCAGTGCAAAAATGTCTAGAATATGTGTGAAAAATCTGCCAAAAAATTGTACAGAGGACCAACTACGGGATAGATTTTCtcaaaaaggagaaataaCAGATGTAAAGCTTATGCGCACCAAAGATGGTAAGAGCCGGCAATTTGCTTTTATTGGTTTCCGCACAGAGCATGAAGCTGAGGAAGCCATTAAATATTTCGATAAAACCTACATTCAAACCTGTAGAATTGCTTGTGAGgTAGCCCGAAAAATTGGTGATCCTAATATTCCTCGTCCATGGAGTCGACACTCattaaagaaggaagaaatagTGACCAAAGATGGGAAAAAAGAtgctgaaaataaaagagttgcAACGGCTAAAGGAGAGAACATGAAGGACATTGATGACCCAAAGCTTCAAGAATTTCTTCAGGTTATGCAGCCTCGTACTAATTCTAAAGTATGGGCAAATGACACTTTAGCTGTTTCTGATAATGTCAACGAGAAGCAAGAAatagcaaagaagaaaatggaagataCAGCAGGTCCAATGGAGAATGAGTTAGTCCAAAATGGCTCATTAGTGAATGACTTCTCAAATAATCATGGACCTGAGAAACCAGATGATCTTGTCCATGATGAAGTTGTTTCAGATACGGAATATTTCAAGAGTAGAGTGACAAAGGAATGGTCTGATTCTGAAAGTAGCgttgatgaagaaaaagacaacAGTGATTCTGTAAGCAGTGAAGATGATGAGAAAGACAGCGATAGTCAAGATAGCGATGctgaagaaaatattcatgATAAATCTTCAAAAGGAACTGGAAGAAGTCGCAGTCAAAAGATACACCAAGAGGGCCAAGAATATACCTCTGGAGGGGATATTTCCCAGGAAAAGGCTGAAGAAAAAAGCCGTTCTGATTATTCTGGTGATGAAGTACCTGAGCATGGGATCCCAACATCAAGTTTGCAAGACAATAATGGAGTTTTTGAATCCTGTCGACTGTTTGTCCGCAATCTGCCATATACAGCCACTGAAGAGGAACTGGAAGAACACTTCAGTAAGTGTGGCAGTGTTTCAGAGGTTCATCTagttattgataaaaatacaaaGCGATCCAAAGGAATAGCATATATTCTCTATACACTTCCAGAATTTGCTGCCAGGGCACGAGCAGAGCTTGACAGTTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCAGGCCATGAAAAAACCTTCAAATAAGGAGAATAATGTTTCCACAGACCAAAGTTCTAAAACGTTAAAACAAAAGAGGATGGAAGAGAGGAAGGCATCTGAAGCTAGCGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTTGAAAACATTGCTCGAAAATATGGTGTAAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAAACACAAGTTATTGCAGAGACCAAAAATGCCCTTTCAAATGCTGGAGTAAATGTAGATGCTTTGGAGGAATTTGCCAACGGTAAAGTTGATGATGCAAAAAGAAGCAACCATGTGCTTTTAGTGAAGAATTTACCCTATGGTTCTTCAGAAAATGAACTGGCAAAGATGTTTGGGAAATTTGGTAGTTTGGACAAAATAATTCTCCCTCCAACAAAAACATTGGCCTTGGTTGTTTTTCTGGAACCAGCTGAAGCTCGAGCTGCTTTTAGAGGGTTAGCTTACAAGCGTTACaaGGATGCTCCGTTGTATTTGGAGTGGGCTCCTTCCAATGTTCTTAGCCAAAGTTCAACGTCTAAGGATAATGAAATGAATAGTGCAGTTGGTGCAAATGATGTCAAGCGGCTGATACTGGAGCAAAATGTGGAAGGAATATCAGATGCAGACATTGACCCAGACAGAGTTGAGGCACGGTCTTTGTTTGTCAAGAACCTCAATTTCAAGACGTCAGATGAGAGTTTAAAACAACATTTTGGCAAACACataaaagatggaagaatTTTGAGTGCCAAGGTGAAGAAGCATATAAAGAATGGGAAAAATGTTTCTATGGGTTTTGGATTCATCGAGTTCGATTCTGTAGAGACTGCCACAAATGTTTCCAGCGATTTACAGGGGACTGTTCTGGACGGGCATGCTCTTATTTTACAACTTTGTCGTGTCAAGAACGATGCACAAGTACTAAATACATCTGACAAGGATAGGAGTTCAACAAAGTTGCTTGTCAGAAATGTAGCTTTTGAGGCAACAGAGAAGGATCTGAGACAGTTGTTTAGTCCATTTGGCCAGATTAAGAGCTTAAGGTTGccgatgaagtttggaagtcATAGAGGTTTTGCTTTCGTAGAGTATATTACACAGCAGGAGGCAAAGAATGCGCTTAAAGCACTTTCAAATACCCACTTGTATGGCAGGCATCTGGTGATAGAGAGAGCAAAGGAAGGTGAGAGTTTGGAAGAACTAAGAGCCAAAACAGCTGCACAATTTGGTGATGACCAAAATGAACATCAAAATTCTGCCAAATTGTCCAAGAAAAGGAAGCACACGGCCATTTTAGATGAAGGGAGGATAAAGTTTGAAAGATTTGCTGATTA 2807 0.3833 MASHDKAFDGAELPSGREWQTVRTVDVIVLGTETMMSIRGRLVLLVLANQNHQRKSQRRDFSSIDKNISAKMSRICVKNLPKNCTEDQLRDRFSQKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAEEAIKYFDKTYIQTCRIACEVARKIGDPNIPRPWSRHSLKKEEIVTKDGKKDAENKRVATAKGENMKDIDDPKLQEFLQVMQPRTNSKVWANDTLAVSDNVNEKQEIAKKKMEDTAGPMENELVQNGSLVNDFSNNHGPEKPDDLVHDEVVSDTEYFKSRVTKEWSDSESSVDEEKDNSDSVSSEDDEKDSDSQDSDAEENIHDKSSKGTGRSRSQKIHQEGQEYTSGGDISQEKAEEKSRSDYSGDEVPEHGIPTSSLQDNNGVFESCRLFVRNLPYTATEEELEEHFSKCGSVSEVHLVIDKNTKRSKGIAYILYTLPEFAARARAELDSSIFQGRLLHVMQAMKKPSNKENNVSTDQSSKTLKQKRMEERKASEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKNALSNAGVNVDALEEFANGKVDDAKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNVLSQSSTSKDNEMNSAVGANDVKRLILEQNVEGISDADIDPDRVEARSLFVKNLNFKTSDESLKQHFGKHIKDGRILSAKVKKHIKNGKNVSMGFGFIEFDSVETATNVSSDLQGTVLDGHALILQLCRVKNDAQVLNTSDKDRSSTKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYITQQEAKNALKALSNTHLYGRHLVIERAKEGESLEELRAKTAAQFGDDQNEHQNSAKLSKKRKHTAILDEGRIKFERFAD 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01630 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 589 661 IPR000504 GO:0003723
Bva14g01630 935 MobiDBLite consensus disorder prediction 286 386 - -
Bva14g01630 935 MobiDBLite consensus disorder prediction 305 321 - -
Bva14g01630 935 CDD RRM5_RBM19_like 709 790 IPR034423 -
Bva14g01630 935 Gene3D - 278 486 IPR012677 -
Bva14g01630 935 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 73 906 - -
Bva14g01630 935 PANTHER RNA-BINDING PROTEIN 19-RELATED 73 906 - -
Bva14g01630 935 SUPERFAMILY RNA-binding domain, RBD 377 481 IPR035979 GO:0003676
Bva14g01630 935 MobiDBLite consensus disorder prediction 899 918 - -
Bva14g01630 935 SUPERFAMILY RNA-binding domain, RBD 800 887 IPR035979 GO:0003676
Bva14g01630 935 MobiDBLite consensus disorder prediction 474 489 - -
Bva14g01630 935 CDD RRM6_RBM19_RRM5_MRD1 809 883 - -
Bva14g01630 935 MobiDBLite consensus disorder prediction 286 304 - -
Bva14g01630 935 MobiDBLite consensus disorder prediction 490 505 - -
Bva14g01630 935 SUPERFAMILY RNA-binding domain, RBD 69 160 IPR035979 GO:0003676
Bva14g01630 935 CDD RRM1_MRD1 73 148 - -
Bva14g01630 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 395 473 IPR000504 GO:0003723
Bva14g01630 935 Gene3D - 580 683 IPR012677 -
Bva14g01630 935 Gene3D - 805 913 IPR012677 -
Bva14g01630 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 811 878 IPR000504 GO:0003723
Bva14g01630 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 397 467 IPR000504 GO:0003723
Bva14g01630 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 591 652 IPR000504 GO:0003723
Bva14g01630 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 711 785 IPR000504 GO:0003723
Bva14g01630 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 143 IPR000504 GO:0003723
Bva14g01630 935 Gene3D - 705 804 IPR012677 -
Bva14g01630 935 CDD RRM4_RBM19_RRM3_MRD1 589 660 - -
Bva14g01630 935 CDD RRM3_RBM19_RRM2_MRD1 396 469 - -
Bva14g01630 935 SMART rrm1_1 396 469 IPR000504 GO:0003723
Bva14g01630 935 SMART rrm1_1 590 657 IPR000504 GO:0003723
Bva14g01630 935 SMART rrm1_1 74 146 IPR000504 GO:0003723
Bva14g01630 935 SMART rrm1_1 810 881 IPR000504 GO:0003723
Bva14g01630 935 SMART rrm1_1 710 788 IPR000504 GO:0003723
Bva14g01630 935 SUPERFAMILY RNA-binding domain, RBD 697 795 IPR035979 GO:0003676
Bva14g01630 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Bva14g01630 935 MobiDBLite consensus disorder prediction 357 374 - -
Bva14g01630 935 SUPERFAMILY RNA-binding domain, RBD 585 673 IPR035979 GO:0003676
Bva14g01630 935 MobiDBLite consensus disorder prediction 473 507 - -
Bva14g01630 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 809 885 IPR000504 GO:0003723
Bva14g01630 935 MobiDBLite consensus disorder prediction 322 345 - -
Bva14g01630 935 SMART rrm2_1 710 788 IPR003954 GO:0003676
Bva14g01630 935 SMART rrm2_1 810 881 IPR003954 GO:0003676
Bva14g01630 935 SMART rrm2_1 396 469 IPR003954 GO:0003676
Bva14g01630 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 709 792 IPR000504 GO:0003723
Bva14g01630 935 Gene3D - 46 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01630 Bva-Chr14 8755513 8765834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01630 711 934 Eukaryotic Initiation Factors Gene Family AT1G49760 24.895 5.33e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01630 K14787 - vvi:100247562 1119.76