Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva14g01598 | ATGGAAGATCAAGCAGTTTTAGGTGGCGGAGTTCTTAATAGTTTTGTCAgggaggaagaggaagatgagTTTCGCAGTTGctgtgaagatgaagatgtaTGGAAAGAAACTGAGGAGCGGGTGAAGGAAGAGTTGAAGGATGACCTCGATGAATTCTCAGTAAAAATGTTCTTCAAGGGCTTGTCAATTGCAGGTGTTGAAAATTCCAATTCGGGGTTTTCTGGAATTGGAGTGGTCATGGAAAGACCATCTGGTATACCTGCTATTCAGGTGCAGAAAAAGCTTGATCTTTATGTAGAGGAGTCAGTAGCTAACTACTTGGCTCTCGTGGATGGATTGGCGGAAGCTATGCAAAATAAGATCCGCAGGGTTTATGCTTTTACAGATTCTGAGTTGCTGTACAATCAGATAATGTTGGAGAAAAATCTTGACATGCCACTTTTAATGGCACTGCGAGAAAGGATTCTGGAACATGCCGAtaattttgaagcttttgtCCTGAATCTTGTTCCCAATATTGATCTTGAGCAGCCTCTGCAATTAGCCAAAGTAGCAATTGGACTTGTCTCCTATCCTATAAATAGCGAGATATTACTTGAAAGCTGTTCTATCTGTTGTGAGGACAAGCCATTGCCAATTATGATCACTATGAAATGTTCACACAAGTTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGAAAAGTACAGTCTTCTCAAGTCCCGATAAGATGCCCGCAACCAAGATGCAAATATTACATCTCTACCACCGAGTGCAGgtcttttcttccatttaaCTCTTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCGAATGTTTGCCATTCAGATAGAATATACTGCCCATTTCCCAATTGTTCTGTTCTCCTTGATCCTCGTGAATGTTTATCAGCTAGGGCTAGCTCTTCTAGCCAGTCAGACAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTCGACTGCAAGGTTCCTTGGCATTCTTCTATGACCTGTGAAGAGTACCAGAATCTACCGGAGGAGGAGAGAGATGCGTCTGACATAACCTTACATAGACTTGCTCAAAATAAAAGGTGGAAGCGTTGTCAGCAATGTCGCCGGATGATTGAGCTCACCCATGGATGTTACCACATGACATGCTGGTGCGGCCATGAGTTCTGCTATTCTTGTGGCGCAGAATACAGAGACAGCCAACAGACATGCCAATGTGCATTCTGGGATGAAGACAACTCCGAAGATTCAGTGACTCAATCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCTCTGATCACAGATGCTTATTCCGACCAAGAAAGGTCGCAGCTTCAACTCATTCAAAGGTTCCTAGCTGGGGGTTTCAGCCTGGCTGATCATCATCCATACCAATCTCCGCCTCGTTGTACAGATTCCTATGTAGATGCCATGAAGGATCTCCATCAGCTTCCATGGCTTGAGAGGTTTGTGTCTGTGATAAGTGACAACTACTATGAAGAGTACATTCAATG | 1550 | 0.4174 | MEDQAVLGGGVLNSFVREEEEDEFRSCCEDEDVWKETEERVKEELKDDLDEFSVKMFFKGLSIAGVENSNSGFSGIGVVMERPSGIPAIQVQKKLDLYVEESVANYLALVDGLAEAMQNKIRRVYAFTDSELLYNQIMLEKNLDMPLLMALRERILEHADNFEAFVLNLVPNIDLEQPLQLAKVAIGLVSYPINSEILLESCSICCEDKPLPIMITMKCSHKFCSHCLRAYADGKVQSSQVPIRCPQPRCKYYISTTECRSFLPFNSFESLEKALAEANVCHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCQRFICVDCKVPWHSSMTCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDSQQTCQCAFWDEDNSEDSVTQSLQESEQWAWETFNSLPLITDAYSDQERSQLQLIQRFLAGGFSLADHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYEEYIQ | 516 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva14g01598 | 516 | ProSiteProfiles | TRIAD supradomain profile. | 198 | 416 | IPR044066 | - | |
Bva14g01598 | 516 | Pfam | IBR domain, a half RING-finger domain | 361 | 410 | IPR002867 | - | |
Bva14g01598 | 516 | Pfam | IBR domain, a half RING-finger domain | 273 | 341 | IPR002867 | - | |
Bva14g01598 | 516 | SUPERFAMILY | RING/U-box | 354 | 418 | - | - | |
Bva14g01598 | 516 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 19 | 515 | - | - | |
Bva14g01598 | 516 | SMART | ibrneu5 | 351 | 410 | IPR002867 | - | |
Bva14g01598 | 516 | SMART | ibrneu5 | 269 | 341 | IPR002867 | - | |
Bva14g01598 | 516 | SUPERFAMILY | RING/U-box | 201 | 278 | - | - | |
Bva14g01598 | 516 | Coils | Coil | 35 | 55 | - | - | |
Bva14g01598 | 516 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 19 | 515 | IPR031127 | GO:0004842|GO:0016567 | |
Bva14g01598 | 516 | Gene3D | - | 54 | 190 | IPR036397 | GO:0003676 | |
Bva14g01598 | 516 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 282 | IPR013083 | - | |
Bva14g01598 | 516 | Gene3D | - | 339 | 465 | - | - | |
Bva14g01598 | 516 | ProSitePatterns | Zinc finger RING-type signature. | 219 | 228 | IPR017907 | - | |
Bva14g01598 | 516 | ProSiteProfiles | Zinc finger RING-type profile. | 202 | 249 | IPR001841 | - | |
Bva14g01598 | 516 | Pfam | Reverse transcriptase-like | 65 | 171 | IPR002156 | GO:0003676|GO:0004523 | |
Bva14g01598 | 516 | SUPERFAMILY | Ribonuclease H-like | 67 | 171 | IPR012337 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva14g01598 | Bva-Chr14 | 8502749 | 8506948 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva14g01598 | 53 | 401 | C3H Transcription Factor Family | AT2G19610 | 25.348 | 2.32e-30 | 120 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva14g01598 | - | - | gmx:100783040 | 869.381 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva14g01598 | 14 | 8502749 | 8506948 | Bva14g01598 | 14 | 8502749 | 8506948 | ECH |