Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01598 ATGGAAGATCAAGCAGTTTTAGGTGGCGGAGTTCTTAATAGTTTTGTCAgggaggaagaggaagatgagTTTCGCAGTTGctgtgaagatgaagatgtaTGGAAAGAAACTGAGGAGCGGGTGAAGGAAGAGTTGAAGGATGACCTCGATGAATTCTCAGTAAAAATGTTCTTCAAGGGCTTGTCAATTGCAGGTGTTGAAAATTCCAATTCGGGGTTTTCTGGAATTGGAGTGGTCATGGAAAGACCATCTGGTATACCTGCTATTCAGGTGCAGAAAAAGCTTGATCTTTATGTAGAGGAGTCAGTAGCTAACTACTTGGCTCTCGTGGATGGATTGGCGGAAGCTATGCAAAATAAGATCCGCAGGGTTTATGCTTTTACAGATTCTGAGTTGCTGTACAATCAGATAATGTTGGAGAAAAATCTTGACATGCCACTTTTAATGGCACTGCGAGAAAGGATTCTGGAACATGCCGAtaattttgaagcttttgtCCTGAATCTTGTTCCCAATATTGATCTTGAGCAGCCTCTGCAATTAGCCAAAGTAGCAATTGGACTTGTCTCCTATCCTATAAATAGCGAGATATTACTTGAAAGCTGTTCTATCTGTTGTGAGGACAAGCCATTGCCAATTATGATCACTATGAAATGTTCACACAAGTTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGAAAAGTACAGTCTTCTCAAGTCCCGATAAGATGCCCGCAACCAAGATGCAAATATTACATCTCTACCACCGAGTGCAGgtcttttcttccatttaaCTCTTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCGAATGTTTGCCATTCAGATAGAATATACTGCCCATTTCCCAATTGTTCTGTTCTCCTTGATCCTCGTGAATGTTTATCAGCTAGGGCTAGCTCTTCTAGCCAGTCAGACAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTCGACTGCAAGGTTCCTTGGCATTCTTCTATGACCTGTGAAGAGTACCAGAATCTACCGGAGGAGGAGAGAGATGCGTCTGACATAACCTTACATAGACTTGCTCAAAATAAAAGGTGGAAGCGTTGTCAGCAATGTCGCCGGATGATTGAGCTCACCCATGGATGTTACCACATGACATGCTGGTGCGGCCATGAGTTCTGCTATTCTTGTGGCGCAGAATACAGAGACAGCCAACAGACATGCCAATGTGCATTCTGGGATGAAGACAACTCCGAAGATTCAGTGACTCAATCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCTCTGATCACAGATGCTTATTCCGACCAAGAAAGGTCGCAGCTTCAACTCATTCAAAGGTTCCTAGCTGGGGGTTTCAGCCTGGCTGATCATCATCCATACCAATCTCCGCCTCGTTGTACAGATTCCTATGTAGATGCCATGAAGGATCTCCATCAGCTTCCATGGCTTGAGAGGTTTGTGTCTGTGATAAGTGACAACTACTATGAAGAGTACATTCAATG 1550 0.4174 MEDQAVLGGGVLNSFVREEEEDEFRSCCEDEDVWKETEERVKEELKDDLDEFSVKMFFKGLSIAGVENSNSGFSGIGVVMERPSGIPAIQVQKKLDLYVEESVANYLALVDGLAEAMQNKIRRVYAFTDSELLYNQIMLEKNLDMPLLMALRERILEHADNFEAFVLNLVPNIDLEQPLQLAKVAIGLVSYPINSEILLESCSICCEDKPLPIMITMKCSHKFCSHCLRAYADGKVQSSQVPIRCPQPRCKYYISTTECRSFLPFNSFESLEKALAEANVCHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCQRFICVDCKVPWHSSMTCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDSQQTCQCAFWDEDNSEDSVTQSLQESEQWAWETFNSLPLITDAYSDQERSQLQLIQRFLAGGFSLADHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYEEYIQ 516
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01598 516 ProSiteProfiles TRIAD supradomain profile. 198 416 IPR044066 -
Bva14g01598 516 Pfam IBR domain, a half RING-finger domain 361 410 IPR002867 -
Bva14g01598 516 Pfam IBR domain, a half RING-finger domain 273 341 IPR002867 -
Bva14g01598 516 SUPERFAMILY RING/U-box 354 418 - -
Bva14g01598 516 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 19 515 - -
Bva14g01598 516 SMART ibrneu5 351 410 IPR002867 -
Bva14g01598 516 SMART ibrneu5 269 341 IPR002867 -
Bva14g01598 516 SUPERFAMILY RING/U-box 201 278 - -
Bva14g01598 516 Coils Coil 35 55 - -
Bva14g01598 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 19 515 IPR031127 GO:0004842|GO:0016567
Bva14g01598 516 Gene3D - 54 190 IPR036397 GO:0003676
Bva14g01598 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 282 IPR013083 -
Bva14g01598 516 Gene3D - 339 465 - -
Bva14g01598 516 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Bva14g01598 516 ProSiteProfiles Zinc finger RING-type profile. 202 249 IPR001841 -
Bva14g01598 516 Pfam Reverse transcriptase-like 65 171 IPR002156 GO:0003676|GO:0004523
Bva14g01598 516 SUPERFAMILY Ribonuclease H-like 67 171 IPR012337 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva14g01598 Bva-Chr14 8502749 8506948 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01598 53 401 C3H Transcription Factor Family AT2G19610 25.348 2.32e-30 120
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01598 - - gmx:100783040 869.381
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g01598 14 8502749 8506948 Bva14g01598 14 8502749 8506948 ECH