Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01394 ATGTCATCCAGCTCTGGTAACAAGTGGGATCCTGACAAAATACTTAAACTATATCTGCATGACTATATGATCAAAAAGGGAATGCATGAAACGGCTGCAATTTTCAAAAAGGAGGCAGATATTGATAACAGTCCTATTGTGATTGATTCTCCAGATGGGTTCCTGCATGAATGGTGGTCTATTTTCTATGAGACATACTCcagtaaacaaaataatcagAAGAATGGGCCAGAATCCTCTAGTAAGGCCACGCAAAAGACAGATGACAGGATATGTATACCTCCTGTGATCTCTCAGCCATCAACAACTAAGCAGAGACCTCAACAGCTTCAAATCAGTTCTAACTTTAACAGGACGATTGGGCAACCAGTTGCTTGTCCATTTCCTTCTAAAGTTTATCATCGAGATCATCTTTCATACCTGGCCAAGGATGCTGATCAAAGTATACATCCTATCAATGCAAATAAACTGAAGTTCATGGCAGGGTCCAGTTCAAATCATATGCAGCAAGATATTAGCAAGCTGCCCCAGGAGCAAATCTTTAGGGAAAGTGGAGGTGGCATTCACCTGGGCAGCGATGTGCCAAGAGACCCCCGGGACATAGTACCAAGAACTATTCAGCCTGTAGACAGACTTTTTGAAACAAAAGCAAGTGAAGGTTTCAATTTGGTGCCACTAAATGGATCATGGCCTCCTCTAAATGTAGGTGGTGAAATAACGCAGATCATGTTCCAAATGGCACAAGCTGTAATCCAACAGAATCAGGGACAGCAGCTGCTATCGAGGGATGTGGAGAATATAAAGAGAAGGACAGCATTATCTTCAAGAGTTCAAGAAAATATCTTGGACCATGTGAATGCAGAGGAAGATAGACCTGTTGATGAAAATGTTGACTCGTTCCTGtctaatgaaaatgaaaatgctgaTAATAGAGGCGTCCCTTTCAGCAATCTGAAACGTATTTCTGCTACATGCAATCCAAATGAAGGCTTTTCATTCGAAGAGGTTGGCTGCCTTCACTCGAGCAAAGGCAAGGTCTTGTCCTGCCATTTTTCATCGGATGGAAAGGTTTTAGCAAGTGCCGGACATGAGAAGAAGGTGGTTTTCATCTGGAATATGGAAACTTTCGATTGTGTTTCTACTTCAGAAGCACATTCACTTCTCATCACAGATGTTCGGTTTAGACCAGGTTCAACTATATTTGCTACATCTTCCTTTGATAGAACTGTTAAAATATGGGATGCAGCCAAACCAAAcaaatcattgttcaagttcACTGGGCATGCTGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAGGCAGACCTCCTTTGCTCGTGTGATAACAATGATATAATCCGACTTTGGAATCTGAACCTCTCTGTTTGCATGCATGTCATTAAGGGAGCTAGTAAACAAGTCAGGTTCCAGCCTCGTTTTGGGAAGCTTTTGGCTACTGCTACAGGAAATTCTATCAATGTAATTGATATTGAGAGTAACAGCCTTCTTTACAATCTAAAGGGACATGTCAAAGATGTCCTCTCCATTTGTTGGGAAGCAAGTGGAAACTACATTGCCTCTGTCAGTGAAGATAAAGCTTGTATGTGGTCAGTTATATCAGGCGGAAAATGCATACACGAGTTATGTTTGAATGGAAACAAGTTTCAATCTTGCGCATTTCATCCTGGATATTCTAACCTTGTAGTAATTGGAGGCTATCAGTCCCTGGAACTATGGAGTCCATCTGAGAGCAGTAAATCATGGGGTATTCCTGCCCACAAGGGATTAATTGCTGGACTCGCAGAGTCTCAGCAGAATCAAATGATGGCATCAGCTAGCCATGATCATTGCGTGAAATTATGGAAATA 1871 0.4067 MSSSSGNKWDPDKILKLYLHDYMIKKGMHETAAIFKKEADIDNSPIVIDSPDGFLHEWWSIFYETYSSKQNNQKNGPESSSKATQKTDDRICIPPVISQPSTTKQRPQQLQISSNFNRTIGQPVACPFPSKVYHRDHLSYLAKDADQSIHPINANKLKFMAGSSSNHMQQDISKLPQEQIFRESGGGIHLGSDVPRDPRDIVPRTIQPVDRLFETKASEGFNLVPLNGSWPPLNVGGEITQIMFQMAQAVIQQNQGQQLLSRDVENIKRRTALSSRVQENILDHVNAEEDRPVDENVDSFLSNENENADNRGVPFSNLKRISATCNPNEGFSFEEVGCLHSSKGKVLSCHFSSDGKVLASAGHEKKVVFIWNMETFDCVSTSEAHSLLITDVRFRPGSTIFATSSFDRTVKIWDAAKPNKSLFKFTGHAEQVMSLDFHPRKADLLCSCDNNDIIRLWNLNLSVCMHVIKGASKQVRFQPRFGKLLATATGNSINVIDIESNSLLYNLKGHVKDVLSICWEASGNYIASVSEDKACMWSVISGGKCIHELCLNGNKFQSCAFHPGYSNLVVIGGYQSLELWSPSESSKSWGIPAHKGLIAGLAESQQNQMMASASHDHCVKLWK 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01394 623 Pfam WD domain, G-beta repeat 377 414 IPR001680 GO:0005515
Bva14g01394 623 Pfam WD domain, G-beta repeat 503 535 IPR001680 GO:0005515
Bva14g01394 623 Pfam WD domain, G-beta repeat 339 372 IPR001680 GO:0005515
Bva14g01394 623 Pfam WD domain, G-beta repeat 421 458 IPR001680 GO:0005515
Bva14g01394 623 Pfam WD domain, G-beta repeat 592 623 IPR001680 GO:0005515
Bva14g01394 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 623 IPR001680 GO:0005515
Bva14g01394 623 Pfam LisH 20 39 IPR006594 GO:0005515
Bva14g01394 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 425 460 IPR001680 GO:0005515
Bva14g01394 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 591 623 - -
Bva14g01394 623 SUPERFAMILY WD40 repeat-like 332 623 IPR036322 GO:0005515
Bva14g01394 623 ProSitePatterns Trp-Asp (WD) repeats signature. 445 459 IPR019775 -
Bva14g01394 623 CDD WD40 335 623 - -
Bva14g01394 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 414 IPR001680 GO:0005515
Bva14g01394 623 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 623 IPR044716 GO:0003714
Bva14g01394 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 425 460 - -
Bva14g01394 623 Gene3D - 472 623 IPR015943 GO:0005515
Bva14g01394 623 SMART Lish 11 43 IPR006594 GO:0005515
Bva14g01394 623 Gene3D - 302 471 IPR015943 GO:0005515
Bva14g01394 623 SMART WD40_4 375 414 IPR001680 GO:0005515
Bva14g01394 623 SMART WD40_4 418 458 IPR001680 GO:0005515
Bva14g01394 623 SMART WD40_4 332 372 IPR001680 GO:0005515
Bva14g01394 623 SMART WD40_4 461 497 IPR001680 GO:0005515
Bva14g01394 623 SMART WD40_4 582 623 IPR001680 GO:0005515
Bva14g01394 623 SMART WD40_4 500 538 IPR001680 GO:0005515
Bva14g01394 623 SMART WD40_4 542 581 IPR001680 GO:0005515
Bva14g01394 623 MobiDBLite consensus disorder prediction 69 107 - -
Bva14g01394 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 414 - -
Bva14g01394 623 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01394 Bva-Chr14 6938778 6943278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01394 356 622 Miscellaneous Gene Families AT5G08390 22.383 4.79e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bva14g01394 WD40 0.015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01394 - - gmx:100783354 737.258