Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01364 ATGGCCTTTGAGCACTACTTTTCTCAGGATTGGAAATCCGCCCCAAGTGCTGTAACAGATACAGAAGATTCCAATGGTTGTTTTGATTGCAACATCTGCTTAGAGTTTGCACATGAACCTGTTGTCACCCTCTCTGGCCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTTCATATGCAAAGTACTTCTCTTGAATCCGACGAGCACCCGCGATGCCCAGTTTGCAAGGCTGATATATCTCATACCACAATGGTACCGTTGTATGGCCGGGGCCAGTCCTCGGCTCACATTCAGCTTGACAGGAAGGCTTCCTTTCGAGATATATTTGTGCCACCAAGGCCACCTGCTTCTGGTGCTCAAGCTCTGATGGGGACGTCATCTCAAAGTGTTCAGCAACTCCCATATCGTAATACTTCCTCACAAATGACGCCAGGGTTCAACCACCCTGTGGTTGGGATGTTTGGAGAGATGGTTTATACTAGAGTGTTTGGCAACCCAGAAAACCTGTATGCATATCCGAATTCTTATCACCTGATGGGAAGTAACAGCAGTAGATTGAGAAGGCAGGAGATGCAGGCAGACAAGTCATTGAacagaatttcaatttttctcttttgctgCTTTCTCTTGTGTCTTATTGTCTTTTG 650 0.4523 MAFEHYFSQDWKSAPSAVTDTEDSNGCFDCNICLEFAHEPVVTLSGHLYCWPCIYKWLHMQSTSLESDEHPRCPVCKADISHTTMVPLYGRGQSSAHIQLDRKASFRDIFVPPRPPASGAQALMGTSSQSVQQLPYRNTSSQMTPGFNHPVVGMFGEMVYTRVFGNPENLYAYPNSYHLMGSNSSRLRRQEMQADKSLNRISIFLFCCFLLCLIVF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01364 216 SMART ring_2 30 76 IPR001841 -
Bva14g01364 216 Pfam RING-type zinc-finger 30 74 IPR027370 -
Bva14g01364 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 138 216 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva14g01364 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 139 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva14g01364 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 105 IPR013083 -
Bva14g01364 216 SUPERFAMILY RING/U-box 25 89 - -
Bva14g01364 216 CDD RING-HC_AtRMA_like 28 78 - -
Bva14g01364 216 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Bva14g01364 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 138 216 - -
Bva14g01364 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01364 Bva-Chr14 6767359 6770198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01364 10 202 C3H Transcription Factor Family AT4G27470 41.475 1.86e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01364 K10666 - gmx:100779793 306.219