Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01348 ATGTCCGACAGCGAAAATCACACCTCTCTTCTGAATGATAAAGCCGATCGTGGTGGTTCATCTCCCGACCGTAGCTACCGTGATAAGTCCAATTCTCATGGTCCTGATGATGAGAGGTTGAGGATCAGTAAGAGAGATGGAGCGAGGAGAGGTTTTCATGAGCACCATCTCAGAGGCTATAAGGATGGAGGCTTTAGAGGAAGGAGCAACTATGATCATCATCGGATACATAATCGTGACAAGCATCGTAATCATGTTCGAGATGGGGAAATGAGACACAGACATGGAAGACATTTTAGTTACAGATCCAGAAGGGAATCTAGATCACGTTCCAGATCACCTTCACGTTCAGAAAGcaAAAGGAACAGTAATTTTGACGTAGCACCACCTTCTGTGACTGTGATGCCCGCTGCTGTTCTTCCAGGAACTGTGCAAAACTTGTCATCAGTTGGGATGTCACAGATTGGAGCACTTGCCTTGATGCCAGTTCAAGCTATGACGCAGCAGGCTACACGGCATGCACGGCGTGTATATGTTGGTGGGCTTCCCCCTTTGACTAATGAGCagGCAGTTGCAACATTCTTCAGCCATGTTATGAATGCTATTGGAGGAAATTCTTCTTATGCAGGTGATTCTGTTGTAAATGTCTACATTAATCGTGAGAAGAAATTTGCATTTGTGGAAATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATTATATTTGAGGGTGTTTCTGTAAGGGTTCGTAGGCCTACAGATTATAATCCTTCATTAGCCGCTGTTCTAGGTCCTAGCCAGCCAAGTCCCCACCTTAAGTTGTCTGCAGTTGGGCTTGCTCCAGGACCAATTGGTGGAACTGAGGGACCTGACCGCATCTTTGTGGGTGGGCTACCATACTTCTTTACTGAAGCACAAATAAGAGAATTGCTCCAATCTTTTGGAGCACTCCGTGCTTTTGATCTGGTTAGGGATAAAGACACTGGGAATTCTAAAGGATATGGTTTCTGCATGTACCAGGATCCTGCTGTAACAGATATAGCTTGTGCTGCCCTGAATGGTCTTAAAATGGGTGATAAAACGCTGACCGTAAGGCGTGCTACTTTCAGCGGACAAtccaaaatggaaaaggaagaTATCTTCACACAGGCACAACAGCATATAGCTATGCAGAAAATAGCACTGGAAGTTGGTGGAATGAATCTTCCAGGAACTGAAAGAGGGCCAATAATGAATGATGAAACCCCCACGAGAGTTTTATGCTTGACTGATGCCATCACTCTTGATCAACTGAGGGATGATGATGAGTATGATGAAATATTGGAGGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCACAGTGGAGAGCTGCTTCCAGGTGTTGGAAAGGTGTTCTTGGAATATTCTGATAATGTTGGTTGTTCCACTGCAAGGAATGCACTACATGGAAGGAAGTTTGGAGGCAATGTTCTCgatgactatatatataaccacGAAGGACTCTTTCTTCTCATCAGTGTCCGTTTTCGAAGGCTATTTACTGAATTTCATTCTCTATCTGCAGCAAGTTATTCTTATTGCTA 1628 0.4306 MSDSENHTSLLNDKADRGGSSPDRSYRDKSNSHGPDDERLRISKRDGARRGFHEHHLRGYKDGGFRGRSNYDHHRIHNRDKHRNHVRDGEMRHRHGRHFSYRSRRESRSRSRSPSRSESKRNSNFDVAPPSVTVMPAAVLPGTVQNLSSVGMSQIGALALMPVQAMTQQATRHARRVYVGGLPPLTNEQAVATFFSHVMNAIGGNSSYAGDSVVNVYINREKKFAFVEMRTVEEASNAMALDGIIFEGVSVRVRRPTDYNPSLAAVLGPSQPSPHLKLSAVGLAPGPIGGTEGPDRIFVGGLPYFFTEAQIRELLQSFGALRAFDLVRDKDTGNSKGYGFCMYQDPAVTDIACAALNGLKMGDKTLTVRRATFSGQSKMEKEDIFTQAQQHIAMQKIALEVGGMNLPGTERGPIMNDETPTRVLCLTDAITLDQLRDDDEYDEILEDMRDECCKFGTLMNVVIPRPNHSGELLPGVGKVFLEYSDNVGCSTARNALHGRKFGGNVLDDYIYNHEGLFLLISVRFRRLFTEFHSLSAASYSYC 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01348 542 Gene3D - 417 514 IPR012677 -
Bva14g01348 542 MobiDBLite consensus disorder prediction 75 105 - -
Bva14g01348 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 248 IPR000504 GO:0003723
Bva14g01348 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Bva14g01348 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 258 IPR000504 GO:0003723
Bva14g01348 542 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 25 506 IPR006529 GO:0003723|GO:0005634|GO:0006397
Bva14g01348 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Bva14g01348 542 MobiDBLite consensus disorder prediction 1 129 - -
Bva14g01348 542 SMART rrm1_1 176 254 IPR000504 GO:0003723
Bva14g01348 542 SMART rrm1_1 296 369 IPR000504 GO:0003723
Bva14g01348 542 Gene3D - 170 268 IPR012677 -
Bva14g01348 542 SUPERFAMILY RNA-binding domain, RBD 88 255 IPR035979 GO:0003676
Bva14g01348 542 SUPERFAMILY RNA-binding domain, RBD 296 506 IPR035979 GO:0003676
Bva14g01348 542 Gene3D - 292 397 IPR012677 -
Bva14g01348 542 CDD RRM3_U2AF65 421 506 - -
Bva14g01348 542 PANTHER RNA-BINDING PROTEIN 16 514 - -
Bva14g01348 542 CDD RRM1_U2AF65 174 256 - -
Bva14g01348 542 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 16 514 - -
Bva14g01348 542 MobiDBLite consensus disorder prediction 9 74 - -
Bva14g01348 542 CDD RRM2_U2AF65 295 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01348 Bva-Chr14 6678882 6688118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01348 297 383 Eukaryotic Initiation Factors Gene Family AT1G22760 31.034 2.65e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01348 K12837 - vvi:100243034 636.336