Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01306 ATGGCGGATGCGAGCGTCGACTATTTGCAAATAGCTAACGGGAACTTTGATGGATTCAACGGTGGTGATAACGATGTACTTATAGATCTTGATACAATTCTCAGCGTGCTTGATGAGGATTCTGACCCTTCTGAGAGTAGTCGAGACAATTCTTCATTAAAGAATGTATCACCTGGAGAGTCTGGTATCCGCGATAATTCTCAGCTTCACAGTGGTGATTCTGTTATTGactatgaaaatgaaaaccagGGACCTTCTTTACGGACTTGCTCTTCCCAGTATGCATTCCTTGAAAGTGAAGGGGTTTGCTCCACAGAAAGGGCAGGATTTTCCGGATCTCAGATGCCCATTCATGGTGCTGAAGCACATTTAAACAATCTGTCTGATTGTGGAAATAGTGTATCTCAGAGTATATTGAACGGTGACAAGGAGAGCCAGTTCAGGCCCATGGGAGACAATGTTGAATCTGGATATGCTTCACACAGCCCTATGATTGgggattttgatttaaattttggcCACTATGGAGCTTTTGATGAAGACACTGCTGGTGGAGTTTCTGGGCAGCAAGAAAATGACTCATGTTCATCTTTGGAAATGTCATTCATGGATGCTGATAGGTCTTCCCATATTGCAACTTCGATTGATTCTACAATTTGCCAAGGTTCCAATGTACTTAGTGATTATACAGACTACAATTCATCCCTGCTTTCTTGCCTGAGTACAGATGATAGGCCTTTTGTTGCTGACTCGTATCTTGGTTATTTGGCTAATGGTGTTGGTTATCAGTTTTGGTCAACTAAGGAAGAAACAATGACAAACGTGAAGGATGAGAAGGTGGAGTTCTTGGCTGATACTGCACGTGTAAGTAGTGGCATGCACTCCACTACTAGTGGGGGAATACCTTTACAAGATAGTAAATTTGTGTCACCAGATAGTGGACATTCATATTTTGGTAATGTTCTCCTTGAAGACAAGGGAACAGTACAACCTTCACATTGTGCTCCATACATGCGAAGCCTAGACCAAGCAACTTGTGTCAAAGGTGAAAGAAATGAACTAATTATGGCTTACCAGAATTCTTCTCACTTAGATGATACTGTGTTTAATACAGGGCAAGTCATAGAACACTTacctggtatttttcctgtcACTGAATGTCAGagttttgatttcttaaagcATGAGGATAAAAATACAGTTATAACGTCTAATGGTTCCCAGCTATATCAAGACATAAATTATGGAACTTCTTGTACGTTTCCAGTAAAAATGggtaatttgaatttagaaaCCTCTGATGAATCTTTGCTCCATGCTGAGACCTCAATTGCAAGTGAGAAGAAGTTTGGTTGTGTAAAGAGTCAAGGAGAGATTGAACTGTTTCACTGTGCAAGTGCTGATTCTCATCTTTCAAAAGTAGGAACAGAAGTGATTCACAGAGACTTCTTAGAGAAGTCCCATATTGAAGATGACTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGGTTTACCAACCCTGGGAATTCTCTTAGTGTATCACAGTGTTCTACATATGATGATGCCCGTCCTCACATGGCAGTTAGCACAAGAGCAAAGGCATATGATGAGCGATATATATTAAGAGTGGCATTACAGGATCTATCTCAGCCAAAATCAGAAGTTACCCCACCAGATGGATTACTTTCAGTTCCTCTTCTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAAGAAACCTCAAGCTTATACTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCAACTATAGCTTTATTACTAAAGGAAAGACCTTCAATATTTAGACCTCATCAAAATGCACAAAAAAGTGAATTAGAAACGTTGAATCTGGATGCAGACGATGATGTGCTTCCTCAGAATGGTGGAACTAGTGCAAGTGCAGATACATCCAATGGAAGTTCAAATCCGACAAAAAGCATGGATCGGGCAAAGGCAAGGCCGTCTGCAGGAACTCTGATTGTTTGCCCCACTAGTGTCCTAAGGCAATGGGCGGAGGAGTTAAATACCAAAGTAACAAGTAAAGCTAATCTCGCTGTGTTAGTGCATCATGGCAGCAATCGTTCAAAAGATCCTTATGAGCTGGCCAAGTATGATGTTGTTATAACTACTTATTCAATTATAACCATGGAGGTCCCTAAGCAGCCAGTGGTTGACAGAGAGGATGATGAGAAAGGAAATTCTGAATATCATGCTGTTCCACCAACATCGTCAAGTAGGAAAAGGAAGTGCCCTTCTAATTCTAGTAAAAGTGGGAAGAAGGGATCGGATAGTGCATTGCTTGATGCTATTGCTGGTCCATTAGCAAAGGTGGCATGGTTTAGGGTTGTTTTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCTAGGGCATGTTGGGGTCTTCGTGCTAAGCGTAGATGGTGTTTGTCAGGAACTCCTATCCAAAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTCAGATATGATCCTTACGCTGTTTATCAGTCTTTTTGTTCTACAATTAAGATACCAATTAGCAGAAATCCAAGCAAAGGGTATAAAAAGCTACAAGCTGTCTTAAAGACAATCATGTTACGTCGAACCAAAGGCACACTTCTTGATGGAGAACCTATTATTTCCTTGCCACCAAAATCTGTGGAGCTGAGAAAAGTGGAGTTCTCACCAGAGGAGCGTGATTTTTACTCAAGACTAGAAGCTGATTCACGTGCACAGTTTCAGGAATATGCGGATGCTGGAACTGTTAAGCAAAATTATGTCAACATCTTGCTGATGCTCTTGCGCCTTCGCCAAGCTTGTGATCACCCTCTGCTTGTTAGGCCTTATAATTCTAATACTTTATGGAAATCTTCAGAGATGGCAAAGAAGCTTCCTCGAGAAAAGCAAATATCTCTTCTGAATTCTTTAGAAGATAATTTGGCTCTCTGTCGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTGCATCTTGTGGTCACGTTTTCTGTAATCAGTGCATTTGTGAACATCTTAATGCTGATAGCAATCAATGCCCTGCTACAAATTGCAAAGCTCGATTAAACTTGTCTTCAGTGTTCTCCAAATCTACATTAAGCAGTTCTCTGTCTGACCAAACTTCTGATAATTTGCCTGGTCGCTCTGACTCTGAAGTCGTGGGATTTGAGCCTTGTTCTCAGAGTCTGCCGCATGattcttcaaaaattaagGCTGCTCTTGAGGTCTTGCAATCTTTGTGTAAACCACAAGGCCATACATCAAATGACATTTCTATGCAGAGCACTTCTGGGGAAAGTGGTGTCTGCATTGGGAACTCATTCATGGATTCTCCTGAGAGTCAAAATCTGTCAGGGGATGGAAGCTGCAATGCTTCAGTTACTATGGTTGGAGAGAAAGCAATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTGCTCGAAGCATGCCTTAAAAATTCTTCGATTCAGTACAGAAGGCTTGATGGAACAATGTCAGTTCTCGCAAGAGACAAAGCTGTCAAAGATTTTAATACTCTCCCCGAGGTATCAGTTATGATTATGTCTTTGAAAGCTGCCAGTCTTGGACTCAATATGGTGGCAGCTTGCCATGTTCTTTTGTTGGACCTTTGGTGGAATCCCACAACGGAAGATCAAGCAATTGATAGAGCACATCGAATCGGGCAAACTCGTCCCGTTACAGTTTTGCGATTAACCGTGAAAGATACAGTCGAAGATCGTATTCTAGCTCTACAGCAAAAGAAGCGAAAGATGGTTTCCTCTGCATTTGGAGAGGATGGAAGTGGGGGTCGGCAGAGTCGCCTCACCGTGGATGATTTGAAATACTTGTTCATGATGTG 3950 0.4061 MADASVDYLQIANGNFDGFNGGDNDVLIDLDTILSVLDEDSDPSESSRDNSSLKNVSPGESGIRDNSQLHSGDSVIDYENENQGPSLRTCSSQYAFLESEGVCSTERAGFSGSQMPIHGAEAHLNNLSDCGNSVSQSILNGDKESQFRPMGDNVESGYASHSPMIGDFDLNFGHYGAFDEDTAGGVSGQQENDSCSSLEMSFMDADRSSHIATSIDSTICQGSNVLSDYTDYNSSLLSCLSTDDRPFVADSYLGYLANGVGYQFWSTKEETMTNVKDEKVEFLADTARVSSGMHSTTSGGIPLQDSKFVSPDSGHSYFGNVLLEDKGTVQPSHCAPYMRSLDQATCVKGERNELIMAYQNSSHLDDTVFNTGQVIEHLPGIFPVTECQSFDFLKHEDKNTVITSNGSQLYQDINYGTSCTFPVKMGNLNLETSDESLLHAETSIASEKKFGCVKSQGEIELFHCASADSHLSKVGTEVIHRDFLEKSHIEDDSDVCIIEDISHPAPTSRFTNPGNSLSVSQCSTYDDARPHMAVSTRAKAYDERYILRVALQDLSQPKSEVTPPDGLLSVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALLLKERPSIFRPHQNAQKSELETLNLDADDDVLPQNGGTSASADTSNGSSNPTKSMDRAKARPSAGTLIVCPTSVLRQWAEELNTKVTSKANLAVLVHHGSNRSKDPYELAKYDVVITTYSIITMEVPKQPVVDREDDEKGNSEYHAVPPTSSSRKRKCPSNSSKSGKKGSDSALLDAIAGPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYQSFCSTIKIPISRNPSKGYKKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELRKVEFSPEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVRPYNSNTLWKSSEMAKKLPREKQISLLNSLEDNLALCRICNDPPEDAVVASCGHVFCNQCICEHLNADSNQCPATNCKARLNLSSVFSKSTLSSSLSDQTSDNLPGRSDSEVVGFEPCSQSLPHDSSKIKAALEVLQSLCKPQGHTSNDISMQSTSGESGVCIGNSFMDSPESQNLSGDGSCNASVTMVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVLARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVSSAFGEDGSGGRQSRLTVDDLKYLFMM 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01306 1316 ProSitePatterns Zinc finger RING-type signature. 1023 1032 IPR017907 -
Bva14g01306 1316 SMART ultradead3 568 870 IPR014001 -
Bva14g01306 1316 Pfam Helicase conserved C-terminal domain 1159 1258 IPR001650 -
Bva14g01306 1316 MobiDBLite consensus disorder prediction 641 675 - -
Bva14g01306 1316 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 493 1315 - -
Bva14g01306 1316 MobiDBLite consensus disorder prediction 647 669 - -
Bva14g01306 1316 MobiDBLite consensus disorder prediction 48 80 - -
Bva14g01306 1316 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1152 1311 IPR001650 -
Bva14g01306 1316 MobiDBLite consensus disorder prediction 743 784 - -
Bva14g01306 1316 MobiDBLite consensus disorder prediction 758 782 - -
Bva14g01306 1316 Pfam Zinc finger, C3HC4 type (RING finger) 1008 1044 - -
Bva14g01306 1316 Gene3D - 772 905 IPR038718 -
Bva14g01306 1316 SUPERFAMILY RING/U-box 1004 1050 - -
Bva14g01306 1316 Gene3D - 661 749 IPR038718 -
Bva14g01306 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 893 IPR027417 -
Bva14g01306 1316 CDD DEXDc_SHPRH-like 572 893 - -
Bva14g01306 1316 Pfam SNF2-related domain 592 970 IPR000330 GO:0005524|GO:0140658
Bva14g01306 1316 CDD SF2_C_SNF 1161 1268 - -
Bva14g01306 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 1315 IPR027417 -
Bva14g01306 1316 Gene3D - 543 638 IPR038718 -
Bva14g01306 1316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 992 1059 IPR013083 -
Bva14g01306 1316 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 493 1315 - -
Bva14g01306 1316 MobiDBLite consensus disorder prediction 39 80 - -
Bva14g01306 1316 SMART ring_2 1008 1046 IPR001841 -
Bva14g01306 1316 ProSiteProfiles Zinc finger RING-type profile. 1008 1047 IPR001841 -
Bva14g01306 1316 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 587 855 IPR014001 -
Bva14g01306 1316 Gene3D - 908 1315 IPR027417 -
Bva14g01306 1316 SMART helicmild6 1175 1258 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01306 Bva-Chr14 6404570 6413005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01306 543 1315 RAD5 or RAD16-like Gene Family AT1G61140 64.578 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva14g01306 SNF2_N 1.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01306 - - gmx:100805307 1551.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01080 13 5261052 5269813 Bva14g01306 14 6404570 6413005 BWGD
Bva14g01306 14 6404570 6413005 Bva14g01306 14 6404570 6413005 ECH