Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva14g01305 | atgaCAATGAGCCACAACAACAATGTTAACGGTGCCGGCGACACAACGCTGACCAAAGTGTTCGTCGGAGGTTTGGCGTGGGAAACTCCGAAAGAGACCATGCAGAAGCATTTCGACAAGTTCGGCGAGATCCTCGAGGCCGTCATTATCTGCGATAAGCTCACCGGCAGATCCAAGGGCTATGGCTTCGTCACCTTCAAGGAGCCGGAGGCGGCGAAGAAAGCTTGCCAGGATCCCACGCCGATCATTAATGGCCGCCGAGCCAACTGCAATCTGGCTTCGCTGGGAGCACGCCGCCCGAGGTCTTCCGCCAATTCCCCTCCTCGACAACAACCTGGATCCAATGGTGGACCCAGGAACGCACCTGCAGCACCCGCCAATCACGTCAATTGGTATTATCCGGTGGGGACACCAGCTTCTCCTTTCCATCATCAGCACCACCAATCCGTTCCAGTCTATGGATACACGCCAACGTACATTGCAACAGACATAAATTACAATCAgAAGATGAACTACAATGGCGGTGGGGCCTACATGAATGGGCACTATTCTGCTGTGTACCCGAGCCAGGCTATTGTAGGTGCAAATGCACTGATGCCGATGTACCACCACCCTTTTTATCAATGTCATCCATCGCAGACAATGGGGGTACCGGTACCCGCCCACGTATTCCAGCCAACAACAGCGGGGCATTTCACTGCAGTGCCAGCCATCATGTCAAAACCCGCATCTACCACTACCAACACAGGTGTGGCTGGCGCAGGGGAGTGCTTTAAGAAAGTTGCTTA | 788 | 0.5368 | MTMSHNNNVNGAGDTTLTKVFVGGLAWETPKETMQKHFDKFGEILEAVIICDKLTGRSKGYGFVTFKEPEAAKKACQDPTPIINGRRANCNLASLGARRPRSSANSPPRQQPGSNGGPRNAPAAPANHVNWYYPVGTPASPFHHQHHQSVPVYGYTPTYIATDINYNQKMNYNGGGAYMNGHYSAVYPSQAIVGANALMPMYHHPFYQCHPSQTMGVPVPAHVFQPTTAGHFTAVPAIMSKPASTTTNTGVAGAGECFKKVA | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva14g01305 | 262 | SUPERFAMILY | RNA-binding domain, RBD | 12 | 120 | IPR035979 | GO:0003676 | |
Bva14g01305 | 262 | MobiDBLite | consensus disorder prediction | 97 | 117 | - | - | |
Bva14g01305 | 262 | SMART | rrm1_1 | 19 | 91 | IPR000504 | GO:0003723 | |
Bva14g01305 | 262 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 95 | IPR000504 | GO:0003723 | |
Bva14g01305 | 262 | PANTHER | RNA-BINDING PROTEIN ARP1-RELATED | 1 | 249 | - | - | |
Bva14g01305 | 262 | PANTHER | GEO13361P1-RELATED | 1 | 249 | - | - | |
Bva14g01305 | 262 | MobiDBLite | consensus disorder prediction | 97 | 123 | - | - | |
Bva14g01305 | 262 | Gene3D | - | 2 | 111 | IPR012677 | - | |
Bva14g01305 | 262 | CDD | RRM_RBM24_RBM38_like | 18 | 93 | - | - | |
Bva14g01305 | 262 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 77 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva14g01305 | Bva-Chr14 | 6399221 | 6402069 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva14g01305 | 14 | 154 | C2H2 Transcription Factor Family | AT2G19380 | 31.206 | 1.37e-17 | 80.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva14g01305 | - | - | qlo:115954679 | 357.451 |