Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01092 ATGACGAGACAGAAGATACCCATTAAGAAGATCGATAACATAACAGCTAGGCAGGTGACTTTCTCTAAGAGAAGGAGAGGGCTTTTCAAGAAGGCTCAGGAGCTTTCAACCCTTTGTGATGCTGAAATTGCTCTCATAGTGTTTTCTGCCACTGGCAAGCTCTCTGAATATGCTAGCTCAAGTTTGCAAGAGGTGGTTGAGAAGTATAATCTGCATTCAGATCCTAAAAGATTAGACCGTCCGTCCATTGAGCTGCAGACTAAGAGTGACAACTTCGACATGCTGCGCAAGAAAGTTACAAATATGACTCAGGAACTCagGCTGTTGAAGGGGGAAGAGATGGAAGAAATGACGATAGAAGAATTGCAGAAATTAGAGCAATTACTGGACAAAGGCTTGACCcgtgttttaaaagaaaagGATGCAAGAATTGCAAAAGAGATCAGTGACCTTAAGCGGAAGGAAAACCAGATAATGCAAGAGAATAGCCGATTGAAACAGTTACAGATTCTTACACCCGAGCAAGGACAGTCATCTGAGTCAACCATTATATGCAGTTCATCTCATCCTCCTCAAGATTGTGATAGCTCTGACACCTCTCTCAACCTTGGGTTGTCCTTGTTTAAgta 629 0.4134 MTRQKIPIKKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLSEYASSSLQEVVEKYNLHSDPKRLDRPSIELQTKSDNFDMLRKKVTNMTQELRLLKGEEMEEMTIEELQKLEQLLDKGLTRVLKEKDARIAKEISDLKRKENQIMQENSRLKQILTPEQGQSSESTIICSSSHPPQDCDSSDTSLNLGLSLFK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01092 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva14g01092 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva14g01092 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva14g01092 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva14g01092 207 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva14g01092 207 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Bva14g01092 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 204 - -
Bva14g01092 207 Coils Coil 92 112 - -
Bva14g01092 207 MobiDBLite consensus disorder prediction 169 196 - -
Bva14g01092 207 Coils Coil 137 168 - -
Bva14g01092 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva14g01092 207 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Bva14g01092 207 Pfam K-box region 88 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva14g01092 207 PANTHER - 1 204 - -
Bva14g01092 207 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Bva14g01092 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva14g01092 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01092 Bva-Chr14 5201367 5205950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01092 1 203 MADS-box Gene Family AT2G22540 49.367 7.60e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva14g01092 K-box 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01092 - - nnu:104595485 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g01092 14 5201367 5205950 Bva14g01092 14 5201367 5205950 ECH