Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01073 ATGTCTGAGCTTGAAGCTTCCCGctcagagaagaagaagaagaagcaccGCAGCAAAGATGAAGACCAAGACACCACCACTAAAGCTTCTGTGCTTGCAGACTCTGACCCGACTCAGAAAGATTCGGACTTTATGATCAAACCACAGAGCTTCACTCCCCCGATTGACACCTCTCAATGGCCGATTCTCCTCAAGAACTATGACCGCCTTAACGTAAGAACCGGACACTACACTCCAATCCCCGCTGGTTGCTCTCCCCTGAAGCGCCCTCTTGCAGAATACATCAAGTACGGTGTGATGAACCTTGATAAACCAGCGAACCCTTCTTCTCACGAGGTCGTAGCTTGGATTAAACGGATCCTCCGGGTAGAGAAAACGGGTCACAGTGGCACTCTGGATCCGAAAGTCACCGGGAACCTTATTGTTTGCATTGACAGAGCGACCCGGTTGGTGAAATCACAACAGGGTGCTGGAAAAGAGTATGTCTGTGTTGCCCGGTTGCACTCTGCGGTGCCGGATGTTGCAAAGGTGGCGCGTGCGCTTGAAACGCTTACTGGGGCTGTCTTTCAAAGGCCACCACTGATTTCTGCAGTGAAGAGGCAGCTTAGGATCAGGACTATATATGAAAGTAAGCTTCTTGAGTACGATCCAGATAAGCATTTGGTTGTTTTTTGGATTTCTTGTGAGGCAGGTACCTATGTTAGGACTATGTGCGTTCACTTGGGTTTAATTCTGGGTGTGGGAGGGCATATGCAGGAACTTAGGAGGGTCCGTTCTGGTATTATGGGTGAGAAAGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAGGGATGAGAGTTATTTGAGGAGGGTTATTATGCCATTAGAAGTTCTTTTGACAAGTTATAAGAGATTGGTTGTGAAAGATTCGTCTGTGAATGCTATTTGTTATGGAGCTAAGCTTATGATTCCTGGGTTGTTGAGGTTTGACAATGATATTGAGGTTGGGGAGGAAGTTGTGCTTATGACCACCAAAGGTGAGGCAGTTGCATTGGGGATTGCTGAGATGACCACTGCAGTTATTGCAACTTGTGATCATGGTGTGGTGGCTAAGATTAAAAGGGTGGTGATGGATCGAGATACCTATCCAAGGAAATGGGGCTTAGGTCCAAGGGCATCCATGAAGAAAAAGCTGATTGCAGAAGGGAAACTTGATAAGCATGGCAAGGCAAATGAGAATACTCCTCAAGAGTGGCTGAGGAATCTGGTTTTACCCACTGGTGGAGATAAAATGATTGCAGGAATGGCTGCTGCCCCGGAAGCTGATCCGGTGAAGGAGGCTGTTGAAAAGActaagaaggaagaagatggtGAGGGgcgtaaaagaaagaaggttGAAGGCAGTGATAGTCCTGCAGCTCTTCCTGCCAAGAAGGCAAAAGTTGAAGAAGTTGAAGAGGTTGAGAGGGAAGAAAAGGTGAAGGTTAAGAAGGTGAAAGAAGATGCAGTAGAGATTGAAGtcgagaagaaagagaagaagaagaagaagaagaagaaagataaagagaaTGAAGTAGCATCTTCGGATGAGGAGAAAacggaaaaagagaaaaagaagaagcacaaagaagaaaaggttgAAGCTGGTTCACCTGATGTTGAGAAAtctgagaagaagaaaaagaaaaagaaggacaAGGAGGGCGAAACCAATGCTACGGAGATCACaaacgaaaaggaaaatggtGATGCTGACAAGAGTGAGAAGAAAAAgcataagaagaagaaaagtaaagatGCAGAGGAAGAATA 1817 0.4073 MSELEASRSEKKKKKHRSKDEDQDTTTKASVLADSDPTQKDSDFMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPAGCSPLKRPLAEYIKYGVMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFRDESYLRRVIMPLEVLLTSYKRLVVKDSSVNAICYGAKLMIPGLLRFDNDIEVGEEVVLMTTKGEAVALGIAEMTTAVIATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKANENTPQEWLRNLVLPTGGDKMIAGMAAAPEADPVKEAVEKTKKEEDGEGRKRKKVEGSDSPAALPAKKAKVEEVEEVEREEKVKVKKVKEDAVEIEVEKKEKKKKKKKKDKENEVASSDEEKTEKEKKKKHKEEKVEAGSPDVEKSEKKKKKKKDKEGETNATEITNEKENGDADKSEKKKHKKKKSKDAEEE 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01073 605 SUPERFAMILY PUA domain-like 304 385 IPR015947 -
Bva14g01073 605 Gene3D PUA domain 57 388 IPR036974 GO:0003723
Bva14g01073 605 TIGRFAM CBF5: putative rRNA pseudouridine synthase 64 389 IPR004802 GO:0006396
Bva14g01073 605 MobiDBLite consensus disorder prediction 1 47 - -
Bva14g01073 605 CDD PseudoU_synth_hDyskerin 96 278 - -
Bva14g01073 605 Coils Coil 586 605 - -
Bva14g01073 605 SMART DKCLD_2 56 114 IPR012960 -
Bva14g01073 605 SMART pua_5 305 379 IPR002478 GO:0003723
Bva14g01073 605 Pfam TruB family pseudouridylate synthase (N terminal domain) 118 234 IPR002501 GO:0006396
Bva14g01073 605 MobiDBLite consensus disorder prediction 1 27 - -
Bva14g01073 605 SUPERFAMILY Pseudouridine synthase 57 302 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva14g01073 605 Pfam tRNA pseudouridylate synthase B C-terminal domain 235 301 IPR032819 -
Bva14g01073 605 ProSiteProfiles PUA domain profile. 304 379 - -
Bva14g01073 605 Coils Coil 483 547 - -
Bva14g01073 605 Pfam DKCLD (NUC011) domain 57 114 IPR012960 -
Bva14g01073 605 Gene3D Pseudouridine synthase 90 296 - -
Bva14g01073 605 Coils Coil 1 21 - -
Bva14g01073 605 MobiDBLite consensus disorder prediction 445 470 - -
Bva14g01073 605 TIGRFAM unchar_dom_2: uncharacterized domain 2 300 376 IPR004521 GO:0003723
Bva14g01073 605 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 6 604 - -
Bva14g01073 605 MobiDBLite consensus disorder prediction 28 47 - -
Bva14g01073 605 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 6 604 IPR004802 GO:0006396
Bva14g01073 605 MobiDBLite consensus disorder prediction 520 590 - -
Bva14g01073 605 Pfam PUA domain 305 377 IPR002478 GO:0003723
Bva14g01073 605 MobiDBLite consensus disorder prediction 478 513 - -
Bva14g01073 605 MobiDBLite consensus disorder prediction 439 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01073 Bva-Chr14 5134432 5136501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01073 1 541 NAC Transcription Factor Family AT3G57150 75.970 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01073 K11131 - gmx:100806355 803.127