Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01072 ATGGGACTTCTCAGAAGGTTGACAGAATTAGAAGActgcaaaaaattatgtaagtcGGGTCCTGTTATCGGCTCCGATTCAGAAGAATCAGTTGGAAATGTCGGAGTCCACCACAAAATTTCCACTGTTTTAATCATCACCCtcactcttctctcttttactttctttgttGTCTGCTGCTATGCCCTCTATATCAAGTTCCGGCTAAGTCGAAGGAGGAGATCACAACCACAAACGGAAGAAACCCAGGATGAAGATTTTCTTGATGAAGAACACGGCCCTGTGGTGGACCACCCCATATGGTATATCCGAACCACTGGTCTTCAAGAGTCAATTATCAGTGCCATCACGGTTTGTAAGTATAAGAAAGGTGAGGGTTTGATTGATGGTACAGAGTGCTCTGTTTGCTTGAGTGAATTTGAGGAGGATGAGACTCTCAGGCTTTTGCCCAAGTGTAGTCATGCTTTTCATCTCCCTTGTATTGATACCTGGCTCAGATCACACACCAATTGCCCCATGTGTCGTGCTCCTATAGTCACCAACCCAGCAGGAACACTATCTGAGGAGCCTAATCTTGTCGATTCAAGCTCTATGGAGAATACCCAGATGGAAATTGTTATAGATAATGGTGAAAACAGTGTGAGAATGGAAAATGGTGTTCCTGAATTGAGgattggagaagaagaagaagctcaaTTGGAAAGTGAAGAGGATGGGAGAAGGCTGTGTGAAAGAGGAAGCTCAAGTACTGATGATGGGGAGAACTTGCAGCCAAGGAGAAGATCAGTTTCTTTGGATGATTCTACTGCTGCGACGGTCAACCGTGCTCTTGCATCTTTTCCTCTAGCAGAGGGATCTTCTGGGAATTCAAGTAGGCAACTGGGGCATGTGAATGGAGCAATTGTGTCAAAGAGGGTTTCAAAGGGTAGTTCTTCTTTTAGAACAAAGTATCTGCAGAGCGCACCCACTTCAATGAAGAGATCACGCTCCTTCAATGGGAAACACTTGCTATCGTGGCATAGCCGCAGTCAGAAGAAGCCAAATCCTCCTATAAGAAGCTTTTG 1064 0.422 MGLLRRLTELEDCKKLCKSGPVIGSDSEESVGNVGVHHKISTVLIITLTLLSFTFFVVCCYALYIKFRLSRRRRSQPQTEETQDEDFLDEEHGPVVDHPIWYIRTTGLQESIISAITVCKYKKGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRAPIVTNPAGTLSEEPNLVDSSSMENTQMEIVIDNGENSVRMENGVPELRIGEEEEAQLESEEDGRRLCERGSSSTDDGENLQPRRRSVSLDDSTAATVNRALASFPLAEGSSGNSSRQLGHVNGAIVSKRVSKGSSSFRTKYLQSAPTSMKRSRSFNGKHLLSWHSRSQKKPNPPIRSF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01072 354 Pfam Ring finger domain 132 175 IPR001841 -
Bva14g01072 354 MobiDBLite consensus disorder prediction 311 354 - -
Bva14g01072 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 182 IPR013083 -
Bva14g01072 354 SMART ring_2 133 174 IPR001841 -
Bva14g01072 354 MobiDBLite consensus disorder prediction 235 261 - -
Bva14g01072 354 CDD RING-H2_PA-TM-RING 132 175 - -
Bva14g01072 354 MobiDBLite consensus disorder prediction 220 267 - -
Bva14g01072 354 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 36 341 IPR044675 -
Bva14g01072 354 PANTHER RING-H2 FINGER PROTEIN ATL54-LIKE 36 341 - -
Bva14g01072 354 SUPERFAMILY RING/U-box 127 181 - -
Bva14g01072 354 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01072 Bva-Chr14 5132275 5133684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01072 60 334 C3H Transcription Factor Family AT4G33565 40.217 1.20e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01072 - - lja:Lj6g3v2193690.1 329.717