Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01055 ATGGAAAACGAAGATGTTGACATGCAGGGAGAAGAGACCAACGAAGCTGAATTGGATGACATGAAGAGGCGGTTGAAGGAAATGGAGGATGAAGCTGCTGCTTTGCGAGAGATGCAGTCCAAGGTCGAGAAGGAGATGGGATCTGTACAAGATCCTGCTGCTGCTGCCACCAGCCAGGCCAATAGAGAGGAAGTAGATTCTCGATCAATCTTCGTAGGCAATGTAGATTATTCATGCACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACAGTAAACAGAGTTACCATTCGCACTGACAAGTTTGGCCAACCCAAGGGTTATGCTTACGTGGAGTTCATCGAAGCAGAGGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCTGAACTACATGGCCGCCAGTTGAAGGTAACTTCAAAGCGAACCAATATACCTGGAATGAAGCAGTATCGCCCCCGCCGGTCCAATCCTAACATGGGGTTCCGAGGCAGAACCCCATTTGCACCTCCTTTTGTCTATTCTCCATATGGATATGGAAAAGTTCCTAGGTTCAGAGCCCCAATGCGGTATAGCCCCTACTATTG 590 0.4814 MENEDVDMQGEETNEAELDDMKRRLKEMEDEAAALREMQSKVEKEMGSVQDPAAAATSQANREEVDSRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFIEAEAVQEALLLNESELHGRQLKVTSKRTNIPGMKQYRPRRSNPNMGFRGRTPFAPPFVYSPYGYGKVPRFRAPMRYSPYY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01055 196 CDD RRM_II_PABPs 69 140 - -
Bva14g01055 196 PANTHER - 4 193 - -
Bva14g01055 196 Coils Coil 11 45 - -
Bva14g01055 196 MobiDBLite consensus disorder prediction 40 62 - -
Bva14g01055 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Bva14g01055 196 SUPERFAMILY RNA-binding domain, RBD 59 166 IPR035979 GO:0003676
Bva14g01055 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Bva14g01055 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 193 - -
Bva14g01055 196 MobiDBLite consensus disorder prediction 1 23 - -
Bva14g01055 196 Gene3D - 1 150 IPR012677 -
Bva14g01055 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01055 Bva-Chr14 5056616 5059582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01055 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 2.86e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01055 K14396 - mnt:21400190 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00881 13 4116252 4120535 Bva14g01055 14 5056616 5059582 BWGD
Bva14g01055 14 5056616 5059582 Bva14g01055 14 5056616 5059582 ECH