LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva14g01030	ATGGCGGAGCGTGGTTCCTATGGATTGGGTCCTCGATTAGATCTTCAGCAATTACAATATGAAGCCCAGCATCGGTGGTTGCGACCTGCtgaaatttgtgaaattcTTTGTAATTACCGGATGTTCCATATAACATCAGAACCTCCAAACAGGCCACCAAGTGGttcactttttctctttgatcGGAAGGTTTTGAGATATTTCAGAAAGGATGGTCAtaattggagaaagaaaaaagatggaaAGACTGTGAAGGAAGCTCATGAAAAACTAAAGGTGGGAAGTGTTGATGTGTTACACTGTTACTATGCCcatggagaagaaaatgaaacttttCAGAGACGTAGCTATTGGATGCTTGAACCGGATATGATGCACATAGTTTTTGTCCACTACTTGGAGGTTAAGGGTAACAAGACAAACATTGGAGGAAATGCAGATGCTGATGACACTTCATCAGACTCCCTAAAAGGAAGTTCTTCATCTACTTTTCCTACAAATCATAACACTGTGCCTTCAAGAAGCACAGATGCAATGAGCCCGACTAGCACTTTGACATCTTTGTGTGAAGATGCTGATTCTGAGGATATTCACCATGCAAGTTCTGGATTACACTCATTTCATGAACCACCAAGTATGGGGAATAGTCCACACAAGATTGATGGTAGTCTGAGTAGCTCATATATTATGCATCCCTATTCAGGTGATCTTGGACAGTCATCAATTTCTGGAACAGATTATATCCCACTTATTCAGGGAGATAAATCGAGAGGAAGTGATACTGGTACTTCTTTCATGGATGGCCAAAAAGCAGACGGCATGACATCATGGACTAATGTCTTGGAACAATGTACATCTGGATTACATACTGATCCTACTTTTGGATCATTGCCTTCTGTCCCATCCAGTTCAATGGGGAACATCCTTGAACAAGAAAATACTGTTTTCAGTGGCCTTTTAGCTGGGTTAGGGAGCTCTCAGTCTCTACAGTCAAATTGGCAGATTCCTTTTGAGGACAATTCAGGACACTTACAGAAATGGCCTGTGAGCCAATCATTGAGTTTGGAGTTTGGATCTGATTTAAGCACTGGTCATGATGAGAGTCCTGAAATTACCCCGGACTTGTTCACTTTTGATGGTCTGTTAAAAGTTCAGTCTGTGCAGGAGAACTTTCAAAAACAGCATACAGATGCAGAGTCTCAAGTTTCACTGAAATCCAATTATGAGAATGAAGTTCCCACAGAAGAAAGTATCAACTATGCCTTGACTAGAAGGCGCACATTGTTAGATCGGGAGGAGAGCCTGAAGAAAGTTGACAGCTTCTCTCGGTGGATTACTAAAGAACTTGGAGAGGTAACTGATCTGCATATGCAATCCTCACCTGGCATTTCATGGAGCACAGATGAATGTGGGCAAGTGATAGATGATGCTTCATTGAGTCCCTCCCTCTCCCTAGACCAGCTCTTTAGCATACAtgatttttctccaaaatgGGCTTACGCTGAATCAGAAACCGAgGTTTTGATTATTGGAACATTTTTGACAAGTCAACCAGAGGTGGTAAACTGTAAATGGTCTTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTTTAGCCAATGGTATTCTCAGCTGTCATGCTCCTCATCATAATGTGGGACGGGTTCCTTTCTATGTTACATGTTCCAACAGATTAGCATGTAGTGAAGTACGGGAATTCGATTACAAAGAGGGCTTTCCAAAAAGTGTAGATTTTGTAGATTTTTATGACAGTTTCCATTTGCGACTGGAGAACTTACTTTCTTCAAGATCAGTGTACCCTTCTAATAAATCCTTTGTTGGTGAtatggagaaaagaaatttaatttataaacttatttCACTAAGGCAGGAAGCAGAGTATTCAAACAACGAAGAGGTGACTTCAGAGATGGATATATCCCAACGTGAAGTGAGAGAACATCTCTTTTACAGGCAGCTTAAAGCAAAGCTGTACTCATGGCTCCTACATAAAGTAGCCGAAGATGGTAAAGGGCCAAATGTATTAGATGAAGAGGGACAAGGTGTGCTACATTTAGTGGCTGCCCTCGGCTATGATTGGGCCATAACACCAATTATAACTGCTGGAGTCAATATAAATTTCCGTGATGTGAATGGGTGGACAGCTTTGCATTGGGCTGCATCCTGTGGCAGGGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCTCCTGGGGCAGTAACCGATCCATCTCCAGCATTTCCTTCTGGTAGAACACCTGCAGATCTTGCTTCTGCCAATGGACACAAAGGAATCTCGGGTTTTCTTGCAGAGTCTTCATTAACTAGCCACCTGGCATCCCTCTCGGTGAATGATCTAAAGGAAGGTGGTGGGTTAGAAGCTTCAGGAACAAAAGCAGTCCAGACTGTTTCAGAAAGAACTGCAACACCTTTGTTTTATGGTGATGTACCAGATGCTGTCATCCTTAAGGATTCTCTTACTGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATACAGGATGCAATCATTTCAGAGGAAGCAGTTAACTCAATACGAAGATGATGAGTTTGGATTGTCAGATCAGCGAGCTCTTTCCCTTATTGCTTCTAAGGCAAGCAAAGCTGGACAAGGAGATGGGTTTGCTCATACTGCTGCAGTACAAATACAGAAAAAGTTTCGTGgttggaagaagagaaaagaattcCTCATAATTCGTCAAAGAATTGTCAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAACAGTATAAGTCAATCATCTGGTCTGTCGGAATCCTGGAGAAGGTGATACTACGCTGGAGACGAAAGGGGAGTGGTTTGCGAGGATTTCGACAAGATGCAGTTAATAAGGTCCCAACCGAACAAAGTGTTGCTCCTAAAGAGGATGATTATGATTTTCTAAAGGAAGGAAGGAAACAAAGTGAAGAAAGATACCAAAAGGCCCTTTTAAGGGTGAAATCCATGGTTCAGTATCCAGAAGCTCGGGCTCAATACCGGCGGGTGCTAAATGTTGTCGAGGACTTTCGTCAGAACAAGGCAGGCAACATGGATTTGACCAATACAGAGGAGACAGTGGATGGCGTGGAGGACCTAATCGATATTGACATGCTTTTAGATGATAACAATTTCTTACCCAtagaatttaattg	3215	0.4096	MAERGSYGLGPRLDLQQLQYEAQHRWLRPAEICEILCNYRMFHITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENETFQRRSYWMLEPDMMHIVFVHYLEVKGNKTNIGGNADADDTSSDSLKGSSSSTFPTNHNTVPSRSTDAMSPTSTLTSLCEDADSEDIHHASSGLHSFHEPPSMGNSPHKIDGSLSSSYIMHPYSGDLGQSSISGTDYIPLIQGDKSRGSDTGTSFMDGQKADGMTSWTNVLEQCTSGLHTDPTFGSLPSVPSSSMGNILEQENTVFSGLLAGLGSSQSLQSNWQIPFEDNSGHLQKWPVSQSLSLEFGSDLSTGHDESPEITPDLFTFDGLLKVQSVQENFQKQHTDAESQVSLKSNYENEVPTEESINYALTRRRTLLDREESLKKVDSFSRWITKELGEVTDLHMQSSPGISWSTDECGQVIDDASLSPSLSLDQLFSIHDFSPKWAYAESETEVLIIGTFLTSQPEVVNCKWSCMFGEVEVPAEVLANGILSCHAPHHNVGRVPFYVTCSNRLACSEVREFDYKEGFPKSVDFVDFYDSFHLRLENLLSSRSVYPSNKSFVGDMEKRNLIYKLISLRQEAEYSNNEEVTSEMDISQREVREHLFYRQLKAKLYSWLLHKVAEDGKGPNVLDEEGQGVLHLVAALGYDWAITPIITAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGAAPGAVTDPSPAFPSGRTPADLASANGHKGISGFLAESSLTSHLASLSVNDLKEGGGLEASGTKAVQTVSERTATPLFYGDVPDAVILKDSLTAVRNATQAADRIHQVYRMQSFQRKQLTQYEDDEFGLSDQRALSLIASKASKAGQGDGFAHTAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKSIIWSVGILEKVILRWRRKGSGLRGFRQDAVNKVPTEQSVAPKEDDYDFLKEGRKQSEERYQKALLRVKSMVQYPEARAQYRRVLNVVEDFRQNKAGNMDLTNTEETVDGVEDLIDIDMLLDDNNFLPIEFN	1071

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva14g01030	1071	Pfam	CG-1 domain	21	134	IPR005559	GO:0003677
	Bva14g01030	1071	SMART	CG_1_2	18	136	IPR005559	GO:0003677
	Bva14g01030	1071	Gene3D	-	895	942	-	-
	Bva14g01030	1071	ProSiteProfiles	CG-1 DNA-binding domain profile.	15	141	IPR005559	GO:0003677
	Bva14g01030	1071	PANTHER	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	1	1070	-	-
	Bva14g01030	1071	ProSiteProfiles	IQ motif profile.	918	942	IPR000048	GO:0005515
	Bva14g01030	1071	MobiDBLite	consensus disorder prediction	200	220	-	-
	Bva14g01030	1071	Pfam	Ankyrin repeats (3 copies)	691	780	IPR002110	GO:0005515
	Bva14g01030	1071	Gene3D	-	655	790	IPR036770	-
	Bva14g01030	1071	PANTHER	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1	1	1070	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva14g01030	Bva-Chr14	4939207	4948955	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva14g01030	1	1052	CAMTA Transcription Factor Family	AT5G64220	55.576	0.0	1103

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	CAMTA	Bva14g01030		Ank_2	1.9e-06	CL0465

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva14g01030	K21596		-	gmx:100818124	1550.41

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva13g00868	13	4053378	4061385	Bva14g01030	14	4939207	4948955	BWGD

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