Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva14g00981 | ATGTCAGAATTGGAAGAGTATCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAAGATGCATTTGAAAAGTTTGGCAAGCTTGTTGAAGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTgatgaaaagaaagcaatgGAAGATGCTATTGAGGCTATGAATGGGATGGATTTAGATGGTCGGACTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAGGTAGAGATGATGGTGAGCGCTCCAGAGATCGTGGTCGTGATCGTGAACGTAGCCGAGACTTTGGGGGTGGCCGAGGGTCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGCCATTTTGCTCGTGAGTGTCCTAGTGAAGGGGGAAGAGGGGGCAGGTACGGCGGCAGGGAAGGTAGACATGGTGGTAGTCACTATGGTCCTGATAGGAATGCAGAACGTCCTTCTGGTGGACGCAACAGGGATTCTGGTGGTCATGGAGATTCTGGGGGTGATCGATATCATCGGGATCGCGCTGGACCCTATGAGCGACGGGGATCAGGAGGCTTTCGATCTGGATA | 611 | 0.4746 | MSELEEYRCFIGGLAWSTSDRKLKDAFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIEAMNGMDLDGRTITVDKAQPQQGSGRDDGERSRDRGRDRERSRDFGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGREGRHGGSHYGPDRNAERPSGGRNRDSGGHGDSGGDRYHRDRAGPYERRGSGGFRSG | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva14g00981 | 203 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 10 | 79 | IPR000504 | GO:0003723 | |
| Bva14g00981 | 203 | Pfam | Zinc knuckle | 120 | 136 | IPR001878 | GO:0003676|GO:0008270 | |
| Bva14g00981 | 203 | PANTHER | TRANSFORMER-2-RELATED | 1 | 161 | - | - | |
| Bva14g00981 | 203 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
| Bva14g00981 | 203 | Gene3D | - | 117 | 173 | - | - | |
| Bva14g00981 | 203 | Gene3D | - | 2 | 116 | IPR012677 | - | |
| Bva14g00981 | 203 | MobiDBLite | consensus disorder prediction | 143 | 194 | - | - | |
| Bva14g00981 | 203 | ProSiteProfiles | Zinc finger CCHC-type profile. | 121 | 136 | IPR001878 | GO:0003676|GO:0008270 | |
| Bva14g00981 | 203 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
| Bva14g00981 | 203 | SMART | c2hcfinal6 | 120 | 136 | IPR001878 | GO:0003676|GO:0008270 | |
| Bva14g00981 | 203 | MobiDBLite | consensus disorder prediction | 75 | 203 | - | - | |
| Bva14g00981 | 203 | SUPERFAMILY | Retrovirus zinc finger-like domains | 103 | 141 | IPR036875 | GO:0003676|GO:0008270 | |
| Bva14g00981 | 203 | MobiDBLite | consensus disorder prediction | 88 | 111 | - | - | |
| Bva14g00981 | 203 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 1 | 161 | - | - | |
| Bva14g00981 | 203 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 115 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva14g00981 | Bva-Chr14 | 4672973 | 4676070 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva14g00981 | 3 | 66 | C2H2 Transcription Factor Family | AT2G19380 | 37.500 | 4.43e-10 | 56.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva14g00981 | - | - | gmx:100815224 | 272.707 |