LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva14g00973	ATGCCCAGAATAGCAATTCCCAACTCCTCCACCGAACTGCTTCCAGTCCTTCGATTCGTCCTCTCCACCTGCAATTACTTGCGGTTCGGCTCGTTTCACAAGAGgttacagaaaatggcagaTGCTGAGGACATTCAACCCCTCGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCTGGTGACGATGCCCCTAGGGCTGTGTTCCCCAGTATTGTTGGACGACCTCGTCACACTGGTGTTATGGTCGGGATGGGTCAGAAGGATGCCTATGTGGGTGATGAAGCCCAGTCAAAAAGAGGTATTCTCAGCTTGAAGTACCCTATAGAGCATGGTATAGTCAGTAACTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAACATCCAGTGCTTCTTACTGAGGCACCGCTCAACCCTAAAGCCAACAGAGAGAAGATGACACAGATTATGTTCGAGACTTTCAATGTGCCTGCTATGTATGTTGCCATTCAGGCTGTTTTGTCTCTGTATGCCAGTGGTCGTACAACAGgTATTGTGCTCGATTCCGGTGACGGTGTGAGTCACACAGTGCCAATTTATGAAGGGTATGCTCTCCCCCATGCTATCCTCCGGTTGGACCTTGCTGGTCGTGATTTGACAGAGTACTTGATGAAAATTCTTACCGAGAGAGGATACTCTTTCACCACCACTGCTGAACGGGAAATTGTCCGTGATGTGAAGGAAAAGCTAGCGTATGTTGCCCTAGATTTTGAACAGGAATTGGAGACTGCTAAGAGCAGTTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACAATTGGGGCTGAGAGATTCCGTTGCCCAGAAGTACTTTTCCAGCCAGCTCTCATTGGTATGGAAGCTGCTGGTATCCATGAAACTACATACAACTCGATCATGAAATGTGACGTGGATATTAGGAAGGATCTGTACGGAAACATTGTGCTCAGTGGTGGGTCAACTATGTTCCCTGGAATTGCTGACCGTATGAGCAAAGAAATTACCGCTCTTGCGCCAAGCAGCATGAAGATCAAGGTGGTTGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGGTCAATCTTGGCTTCCCTCAGCACCTTCCAACAGATGTGGATTTCCAAGGGTGAATACGATGAATCTGGTCCAGCCATTGTTCACAGAAAGTGCTTCTG	1247	0.4723	MPRIAIPNSSTELLPVLRFVLSTCNYLRFGSFHKRLQKMADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILSLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDVKEKLAYVALDFEQELETAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPALIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva14g00973	415	PANTHER	ACTIN-2-LIKE	39	414	-	-
	Bva14g00973	415	ProSitePatterns	Actins and actin-related proteins signature.	144	156	IPR020902	-
	Bva14g00973	415	PRINTS	Actin signature	155	168	IPR004000	-
	Bva14g00973	415	PRINTS	Actin signature	101	123	IPR004000	-
	Bva14g00973	415	PRINTS	Actin signature	276	292	IPR004000	-
	Bva14g00973	415	PRINTS	Actin signature	89	100	IPR004000	-
	Bva14g00973	415	PRINTS	Actin signature	66	75	IPR004000	-
	Bva14g00973	415	PRINTS	Actin signature	180	199	IPR004000	-
	Bva14g00973	415	ProSitePatterns	Actins signature 1.	93	103	IPR004001	-
	Bva14g00973	415	SUPERFAMILY	Actin-like ATPase domain	44	193	IPR043129	-
	Bva14g00973	415	PANTHER	ACTIN	39	414	IPR004000	-
	Bva14g00973	415	ProSitePatterns	Actins signature 2.	396	404	IPR004001	-
	Bva14g00973	415	Gene3D	Actin; Chain A, domain 4	220	311	-	-
	Bva14g00973	415	CDD	NBD_sugar-kinase_HSP70_actin	48	221	-	-
	Bva14g00973	415	Gene3D	-	178	378	-	-
	Bva14g00973	415	Pfam	Actin	43	415	IPR004000	-
	Bva14g00973	415	SUPERFAMILY	Actin-like ATPase domain	187	415	IPR043129	-
	Bva14g00973	415	SMART	actin_3	45	415	IPR004000	-
	Bva14g00973	415	Gene3D	-	48	409	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva14g00973	Bva-Chr14	4642752	4645694	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva14g00973	39	415	Cytoskeleton Gene Families	AT5G09810	96.286	0.0	758

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva14g00973	K10355		-	sind:105159390	743.806