Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00963 ATGTCGTTCAGAAGCATAGTTCGCGATGTGAGGGATAGTTTTGGGAGCTTATCTAGACGGAGTTTTGATGTTAGGTTGACTGGTCATCACAGAGGAAAATCTCATGGTTCACTAAATGATTTGCATGACCAACCTTTAGTAATTCAAAATAGTCGCTGGGCTAGCCTGCCCCCAGAACTGCTATTTGACGTCATTAGAAGGCTGGAGGAAAGTGAGAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCGCTCTTGGAGAAATATGTGCAAGGAAATTGTGAAGAGCCCAGAGTTCTGTGGCAAGCTTACATTCCCTGTCTCTCTGAAGCAgCCAGGAACACGCGATGGAACCATGCAATGTTTCATCAAAAGGGACAAATCTAATTTAACATACCATCTATATCTTTGTCTCAGCCCTGCTTTGTTGGTTGAAAATGGAAAGTTCCTTCTTTCTGCCAAGAGGACGCGAAGAACCACTTACACAGAATATGTTATTTCTATGGACGCTGAAAATATCTCTAGATCGAGTAGCACATACATTGGAAAGCTGAGGTCAAACTTCCTTGGTACCAAATTCATAATATATGATACACAGCCTCCATGCACCACTGCTCATATTTCCCCTCCTGGGAAGACTAGCAAAAGGTTTTATTCAAAGAAAGTGTCACCAAAGGTCCCTTCTGGGAGTTACAACATAGCTCAGGTAACATACGAATTAAATGTGCTTGGAACTCGAGGTCCAAGGAGGATGCACTGCATTATGCATTCCATCCCAGCCTCGGCACTAGATGCAGGCGGCAGTGTTCCAGGCCAACCGGAGCTTCTTCCTCGCTCACTCGAGGACTCATTCCGGAGCATCTCCTTTTCAAAGTCTTTGGATCACTCTTGTGATTTCAGCAGTGCCCGATTTTCTGAAATTGGTGGATGTGGCAATGAGGATGAGGATGGCAAGGCGAGACCTTTGGTTCTGAAAAACAAGCCTCCAAGATGGCACGAACAATTACAATGCTGGTGCCTCAATTTCCGTGGACGGGTGACAGTTGCATCTGTTAAAAACTTCCAGCTGATTGCTGCCAACCAGCCAGCTGCCGGTGCACCGACACCATCTCAACCGGCGCCATCGGAGCATGATAAGATAATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACCATGGACTATCGATATCCTTTATCTGCATTCCAGGCTTTTGCAATATGCCTAAGTAGCTTCGACACCAAATTGGCTTGTGAATA 1277 0.455 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSLNDLHDQPLVIQNSRWASLPPELLFDVIRRLEESESTWPARKHVVACAAVCRSWRNMCKEIVKSPEFCGKLTFPVSLKQPGTRDGTMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPCTTAHISPPGKTSKRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCIMHSIPASALDAGGSVPGQPELLPRSLEDSFRSISFSKSLDHSCDFSSARFSEIGGCGNEDEDGKARPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANQPAAGAPTPSQPAPSEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00963 425 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Bva14g00963 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Bva14g00963 425 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bva14g00963 425 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bva14g00963 425 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Bva14g00963 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Bva14g00963 425 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bva14g00963 425 PANTHER TUBBY-RELATED 1 425 - -
Bva14g00963 425 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Bva14g00963 425 Gene3D Tubby Protein; Chain A 112 419 IPR025659 -
Bva14g00963 425 Pfam Tub family 114 420 IPR000007 -
Bva14g00963 425 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bva14g00963 425 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bva14g00963 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Bva14g00963 425 Gene3D - 48 101 - -
Bva14g00963 425 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 425 - -
Bva14g00963 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00963 Bva-Chr14 4593263 4596900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00963 1 425 TUB Transcription Factor Family AT1G76900 72.113 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva14g00963 Tub 1e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00963 K19600 - gmx:100814578 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00963 14 4593263 4596900 Bva14g00963 14 4593263 4596900 ECH