Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00832 atgatgaaatgCTTTGACCAAGTTATAGAAATGATGTTGAGGAAAAGTGGCTTTGGAAACACGGTTAGGGACCTCCATTGCACTTGGGAGGGGTTCTTACCTAAGGTTGATGCGATTAGTGCAGCTGGTGCTTGGTGGAGCGTGGGAAAAGTGATGGAAGAACCATTAACCAAAGGAGAGGTGGAAGAAGGTGAAGACAGGGGCACAAGTATGGAAAAGAAGCAACAAGCCAGGGAGGTTTTATCAGAAAATATGAACcgaaaggagaaaaggaagGCAGTGAAGAAACTGAGGCGAAAGCAAATAAGGAAGGAGATGGCGGCTAAGGCGCGCGAGGAAGAAGACGCACGGATCAACGATCCTGAGGAGCGGAGAAGAATAGAGTTAATGGAGCAGCAAGAGGCCGAGAGaatggaaagagaaaggaaggagTTCGAGGAGAAAGAGAGGGCGTGGATCGAAGCTATGGagctgaaaaagaagaaggaagctGAGGAGGCCGCGGAAGAAGAGCAGAGGAAGGCTTTGGAAGAATCGCAGAAACAACAGGATGAGAGGGAGAATGAATTACATGAGGATGATGAATCAGAGTATGTGGAAGATGGACCTCCAGAGATTATTTGGCAAGGAAATGAAATAAtcttcaagaagaaaaaagtgaggGTTCCAAAGAAGGATTCAGATCACAAAAAAGAGGATGCTAATAGACCCACTTCAAATCCTCTTCCTCTACAATCTGAAGAATTTGCTGATTACGTAAATTCATCTACGGTTTCTGCTCAACAGGGGCTAGAGAATGTTGCTCAACAAGTACCAAATTTTGGAACTGAACAGGATAAAGCTCACTGtccttttcatttaaaaactGGAGCATGTCGATTTGGCCAACGTTGTAGCAGAGTCCATTTTTATCCTGACAAATCATGCACACTTCTTGTGAAAAACATGTACAACGGTCCTGGCCTTGCTTGGGAGCAAGATGAGGGGCTTGAGTATACTGATGAGGAGGTTGAAGGATGTTTTGAGGAATTTTACGAGGATGTTCACACAGAGTTCCTGAAATTTggtgaaattgtgaatttcaagGTTTGTAAAAATGGTTCATTTCACCTGCGAGGGAATGTGTATGTACAGTATAAGTTCTTGGATTCTGCTCTTCTTGCTTATAACTCGACCAATGGACGCTTCTTTGCGGGGAAACAGGTAAGGTGTGAATTTGTAAATGTGAGCCGATGGAAGGTTGCCATATGTGGAGAGTATATGAAGTCAGGCTTCAAGACTTGTTCTCGCGGAACAGCTTGCAATTTTATCCACTGTTTCTGGAATCCTGGAGGAGATTATGAATGGGCTGATTTTGACAAATCACCACCAAAATATTGGGTGAAAAAGATGGCTGCTTTATTTGGTTATTCTGATGACTATGAAAAATTGACGAAGCCAGAAAACTCAAATGTGCTGAAGAACTCCAGCAAGGTGTTAAAAACAGATACTGACAGGTACCGCTCAAGAAGATCTAGATCCACAGAGACAGATGAGTTGAATAGGGGTCATTCTGGTAGAAGGGAGCATGAGTATGAAAGAAAGCGAAGAACTCTCTATGAGGAAGAATGGTTAGATAAGGAAGGAGATAGGAGAAAACACAAGAAAGGCACAAGGGAAAGCTCAAGTAAAAGGAACAAGGATGATAATAGGAGTAGCCATGAAGCGGATCTTGACTGGGAAAATCAGCATGGTGTTGTTGGAAGGAGCTCAAGACAAAGAAACAGGGATAATGAGAACTGGATTTATGATACTGGATCTGATGGGGACTGGTCTGATTCTGATAGGGATAGAGATAGGGAAAGACACCATATTCGCAAAAGCTCAAGACATCGGGACAGGGACTACAGTGTTGAAACTAGTAAAAGCTCAAAACAAAGAACTAGATTTCAGGATGATCATGGAGCCTATGAGAACAAAAATGAAGTTGATAGAGATTTGTCAGATAGTGATAGAAATAGGAAAAGTCACCATATTCATAAAGGGAAAAGCTCAAGACATCAGAAAAAGGACATTAGCAATGTAACTAGTGAAGATGAATCTGACAAAGCTTTGTCTGATAGAGATGGCTACCTGGAAACAGAACATGATTCCTCTAGGAAAAGCTCGAGGCACAGACGAAGATCTAGTTTTCAGGATGATTATGGAGGCTATGAGAACAAAAATGAAGTCTATGGAGATACGTCAGGTAGGGACAGAGGAAGGGAAAGGCTCCGTATtcacaaaaggaaaaactcaAGACATCAGGAAAGGGACAAAAGTAATACAATTAGTAACTCTGAATCTGATGAAACTTTGTTTGATAGAGACGGCCACCTGGAAACAGAACATGATTCCTCTGGGAAAAGCTTGAGGCACAGAAAAAGATCTAGTTTTCTAGATTATGAAGGCTGTGAGAACAAAAATGATGAAGTTGATGGGGATTCGTCAGATAGGGGtagagaaagggaaaggcaCCATAATCGCAAAAGGAAGAACTCAAGACATCAGGAAAGGTACAACAGTGATGCAATCAGTGAAGCTGAATCTGACAAAGCTTTATTTGATAGAGATGGCAACCTGAAAACAGATCATAATTCCTCTAGGAAAAGCTCGAGACGGAGAAGATCTTGTTCTAAAGATGATTATGAAGGCCGTGAGAGCAAAAGTGGTGAGGTTGATGGAGATGGGCCACGGAAGGAGAGGAACAGACGAGCGCATTA 2741 0.3999 MMKCFDQVIEMMLRKSGFGNTVRDLHCTWEGFLPKVDAISAAGAWWSVGKVMEEPLTKGEVEEGEDRGTSMEKKQQAREVLSENMNRKEKRKAVKKLRRKQIRKEMAAKAREEEDARINDPEERRRIELMEQQEAERMERERKEFEEKERAWIEAMELKKKKEAEEAAEEEQRKALEESQKQQDERENELHEDDESEYVEDGPPEIIWQGNEIIFKKKKVRVPKKDSDHKKEDANRPTSNPLPLQSEEFADYVNSSTVSAQQGLENVAQQVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKSCTLLVKNMYNGPGLAWEQDEGLEYTDEEVEGCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKFLDSALLAYNSTNGRFFAGKQVRCEFVNVSRWKVAICGEYMKSGFKTCSRGTACNFIHCFWNPGGDYEWADFDKSPPKYWVKKMAALFGYSDDYEKLTKPENSNVLKNSSKVLKTDTDRYRSRRSRSTETDELNRGHSGRREHEYERKRRTLYEEEWLDKEGDRRKHKKGTRESSSKRNKDDNRSSHEADLDWENQHGVVGRSSRQRNRDNENWIYDTGSDGDWSDSDRDRDRERHHIRKSSRHRDRDYSVETSKSSKQRTRFQDDHGAYENKNEVDRDLSDSDRNRKSHHIHKGKSSRHQKKDISNVTSEDESDKALSDRDGYLETEHDSSRKSSRHRRRSSFQDDYGGYENKNEVYGDTSGRDRGRERLRIHKRKNSRHQERDKSNTISNSESDETLFDRDGHLETEHDSSGKSLRHRKRSSFLDYEGCENKNDEVDGDSSDRGRERERHHNRKRKNSRHQERYNSDAISEAESDKALFDRDGNLKTDHNSSRKSSRRRRSCSKDDYEGRESKSGEVDGDGPRKERNRRAH 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00832 913 MobiDBLite consensus disorder prediction 541 913 - -
Bva14g00832 913 MobiDBLite consensus disorder prediction 160 188 - -
Bva14g00832 913 CDD RRM_U2AFBPL 310 408 - -
Bva14g00832 913 MobiDBLite consensus disorder prediction 219 236 - -
Bva14g00832 913 Gene3D - 308 407 IPR012677 -
Bva14g00832 913 MobiDBLite consensus disorder prediction 762 829 - -
Bva14g00832 913 MobiDBLite consensus disorder prediction 583 615 - -
Bva14g00832 913 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 87 774 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva14g00832 913 MobiDBLite consensus disorder prediction 842 873 - -
Bva14g00832 913 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Bva14g00832 913 SUPERFAMILY RNA-binding domain, RBD 341 410 IPR035979 GO:0003676
Bva14g00832 913 MobiDBLite consensus disorder prediction 541 575 - -
Bva14g00832 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 409 IPR000504 GO:0003723
Bva14g00832 913 MobiDBLite consensus disorder prediction 624 668 - -
Bva14g00832 913 SMART rrm2_1 334 405 IPR003954 GO:0003676
Bva14g00832 913 MobiDBLite consensus disorder prediction 60 90 - -
Bva14g00832 913 Coils Coil 128 194 - -
Bva14g00832 913 MobiDBLite consensus disorder prediction 60 93 - -
Bva14g00832 913 ProSiteProfiles Zinc finger C3H1-type profile. 411 441 IPR000571 GO:0046872
Bva14g00832 913 MobiDBLite consensus disorder prediction 681 713 - -
Bva14g00832 913 MobiDBLite consensus disorder prediction 485 525 - -
Bva14g00832 913 SMART c3hfinal6 411 440 IPR000571 GO:0046872
Bva14g00832 913 SMART c3hfinal6 278 304 IPR000571 GO:0046872
Bva14g00832 913 PRINTS U2 auxiliary factor small subunit signature 393 417 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva14g00832 913 PRINTS U2 auxiliary factor small subunit signature 283 302 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva14g00832 913 PRINTS U2 auxiliary factor small subunit signature 302 322 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva14g00832 913 PRINTS U2 auxiliary factor small subunit signature 431 443 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva14g00832 913 PRINTS U2 auxiliary factor small subunit signature 338 353 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva14g00832 913 PRINTS U2 auxiliary factor small subunit signature 366 388 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva14g00832 913 MobiDBLite consensus disorder prediction 881 913 - -
Bva14g00832 913 Coils Coil 71 91 - -
Bva14g00832 913 MobiDBLite consensus disorder prediction 160 204 - -
Bva14g00832 913 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 282 302 IPR000571 GO:0046872
Bva14g00832 913 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 412 439 IPR000571 GO:0046872
Bva14g00832 913 MobiDBLite consensus disorder prediction 492 525 - -
Bva14g00832 913 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 87 774 - -
Bva14g00832 913 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00832 Bva-Chr14 3932912 3940869 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva14g00832 zf-CCCH 6.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00832 K24273 - qsu:112016437 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00832 14 3932912 3940869 Bva14g00832 14 3932912 3940869 ECH