Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00817 ATGTCAGAAATGCGAGTTTCTGATCCGAGCAAACTTCACTTGAAGAAAGAGCTCACTCAAATTCGTAAAGCTGCTCGTGTATTAAGGGATCCTGGTACAACCTCTTCCTGGAAGTCACCACTGAGCACCTCAAGATCTGTGGCAGCTGCTTCTGCGTCTGCATGGAGAAATAACTTGGAGAATGACAGTAAAAAGTTCAATGGCAATTCCCAACATGATTCCCAGTTCACTCTGCAAAATGGAAACGGTAACAATAACAATGGGAAAGAGAAGAGGGTATTCTTGTACAATTGGAAGAACTACAAATCATCGAGCGAGAAGAGTGGAAGGGCCAAAAACAATGAAGacatagaagaagaagaagatggtgGCAATGATGGATCTTCGTCTCTTCTGGGGAGCTTCGAGGATAGCCTCAGTGATGCTCGCAATGGCTGTGATTCAAGGAGCGATACTTACTTGGGGGGTGTTGGCACTCGTTCTTCCATCTTCCGTTGCAGAGATGCAAATCTAGTTTCTTTGGGGACACCATCAGCCAGAAGAGGACTGGGCATTAAGAAAAAGAGTAAGAAAACTTACACCCCTTTggatattttaactaattgtCAGCAACTAGAAACGAATCTAGCTAGGAAGGTAGTAAATTCCAAAACTTTTCTAAATGGGCATCCTCCAATGCCTTTTATCCGTGATGATTCAGTTGAGCTATCTGATGATACTGAAGATTACACTATTTCCGAggatttaagaaaaatttctgGGGCCTCCCATTTGCTTTTGAAACTAAAGCACAAGAATTGGCCTGGGAATTCCTCTAAGTTTTTGAGAACCGGTCAAAAAGAGGATTCTTCGTATTCTTATAGTACCCCTGCATTGTCAACTAGTTCTTATAATAGGTTTGGTCACTATAATCCTAGTACTGTTGAATCCTGGGATGACACAACAACCTCAGTGAATGATGGTGATGATGAGGTAGATGATCATTTGGATTTGCCCCGTGGACAGGGATGTGGGATTCCTTGCTATTGGTCAAAGAGGATACCAAAACATAGAGGGATGTGTAGGAGTTGTTACTCTCCTTCTCTTTCAGACGCTATAAGAAGGAAGGGAAGTAGCATTCTCTGTGGAAGTCAAACTATCTACCCTAGACACCGGAGATCATTATCAACTTCCAACAAGCGAAGAATTTCTTCAAGAAGTACTCAAGGTGTTCTGCCATTGCTTACTAGCAGTGGGGATTTTAGAGGAGGGTCATCACTAGGAACAGGAAGGAGTGATGATGAACTTTCAACAAATTTTGGGGAGCTTGATCTTGAGGGTTTAAGCCGGTTGGATGGGAGAAGGTGGTCATCAAGTTGTAGAAGTCAAGAAGGATTGGATATTGTTGCTCTCAATGGGGAAGGGGATGAGGAAAGCACGCCAGATAATACAAGGACTTTCAGTCAGAAGTATAAGCCTAAGTTCTTCAGTGATCTGATTGGGCAGAATATAGTTGTTCAGACACTTGTAAGTGCTGTTTCAAGGGGACGAATTGCTCCAGTTTATCTTTTCCAAGGTCCCCGGGGGACTGGTAAAACATCAACAGCCAGGATTTTTGCTGCTGCCTTGAATTGTCTGGCTCCTTATGACAGTAAGCCTTGCGGCTACTGCAGGGAATGTACCGATTTTGTTTCTAACAAGAGCAGGCATCTGTTGGAAGTTGATGGAACCAATAAGAAAGGGATGGATAGTGTtagatatatattgaaaaaattatcagtAGGGTCTTCATCTGCCTACTCACAGTATATGTTTTTGGTTATTGATGAGTGTCACTTGCTACCCTCAAAGACATGGCTAGCATTTCTCAAGTTTCTTGAAGAACCACCACAGCGTGttgtcttcatttttataacaacAGATCCTGACAATGTACCGCGAACAATACAATCTCAATGCCAGAAGTAcctttttaacaaaattaaagatgGGGATATTGTGGCAAGGTTGAGGAAAATATCCACTGAGGAGAATTTGGATGTTGAAACAGATACACTGAACCTTATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTAGAACAGATGAGTTTGCTGGGGGAAAGAATTACTACATCTCTTGTCAATGAACTTATAGGTGTAGTTTCAGATGAAAAATTACTGGAACTCTTGGAGTTAGCAATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGAGAATTGATGGACTCTGGAGTTGATCCGATTGTTTTGATGTCTCAACTGGCTAGCCTCATTATGGACATCATTGCTGGGTCATATACTGTCATTGATGCCAACCCTGGTGATTCATTCTTTGGGGGACGAAGTTTGAATGAATCAGAGTTGGAGAGGTTGAAGCAAGCTTTGAAGCTTCTCTCAGAGGCTGAGAAGCAGTTAAGATCTTCTAGTGAACGCTCAACATGGTTCACAGCAACTCTTTTGCAGCTTGGTTCAATGCCTTCTCCAGATCTTACTCCATCAGACAGCAGCAGAAAGCAGGGCTCCAAGACAACTGAAGAGGATCCATCAAGTGCTTCAAGAGAAGTTACTGTTTCCAAGCAGAACTCGGATGCTCTATTTATGCCTCGAAAGTCAACATCCCCTGCATCCCTGCACAAAGTAGTAAATAGCAATCCCAGCCATCAAAGGGatatatcatcaaaatttgatGGTCTCAACGGGAACTCAAAGCCGTCAGGGAAATATGATGGTGCCACACCTGTTTCACGTGATGACCTGGTTGGAAATATGATGTTTAGATGCGTAGATTCAGGGAAGTTATTTGATATCTGGGCACGTTGCATTGGAAGGTGTCACTCAAAGACTTTAAGGCAGCTGCTATACAATCATGGAAAGCTTATGTCCATTTGTGAAGTGGAAGGTGTTCTGGTTGCATATGTTGCATTTGGGGATGGGGATGTTAAACTTAGAGCAGAAAGGTTTCTAAGCAGTATTACAAACTCCATGGAAATGGTTCTTAGACGCAATGTGGAGGTCAGAATTGTCCACTTGCCAGATGCTGAGGGTGAAAATCAGGTCAATCTACTCGAACTAAAGCAAGCTGAGAAAACAATGACAAGTGAAAAGGAACAAAGAGGAGGTCATGTGAATGGAACAGAAGCTTATTCTAATCTTCCTCCATTGCTTGATGGAAACTTTCCATCTAACACCAATCCATCAGATGTGAGAGAGAGGAGACAGGATCTTCCAATGCAGAGAATCGGATCCATTATCCGTGAGCAGAGGCTGGAAACAGCATGGTTACAGGCCGTAGGAAAATGTTCTCCGGGATCATTGAGTCGTTTGAGACCTGAGAGGAATCAAGTCCTGCCTCAGGAGGGTATCTATTATGAAGACCAGATGGAGTCCACGGACTCAACAAGGTTTCCCTCTCAGCATCTGGAAAATGAACTCAAagttttgaaagttaaaaatggTAGGGTCCTACAGAAGGATCAGGTTGGTAAAAGGTCTGATCGTTATCCCATGTCCCCAAGTTTATTGCATAATAGCAGCTTAGCAACAAATTCCAGCAAAGACAATCTGGGATATGAATCAGGTACAGGACCTGGAGGATGTAGTGGATTTTTGTGTTGGAATAACTCTAAGCGAAGAAGGGTGAAGGTAAAAAGTAACTATGTTCGAGCACGGAAAGTTGGAAGTTTTCCATTGTTTGGAGAGTGTGGTAAGTCAAAGAGAAAGGAATCTGGAAGATA 3752 0.4136 MSEMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSTSRSVAAASASAWRNNLENDSKKFNGNSQHDSQFTLQNGNGNNNNGKEKRVFLYNWKNYKSSSEKSGRAKNNEDIEEEEDGGNDGSSSLLGSFEDSLSDARNGCDSRSDTYLGGVGTRSSIFRCRDANLVSLGTPSARRGLGIKKKSKKTYTPLDILTNCQQLETNLARKVVNSKTFLNGHPPMPFIRDDSVELSDDTEDYTISEDLRKISGASHLLLKLKHKNWPGNSSKFLRTGQKEDSSYSYSTPALSTSSYNRFGHYNPSTVESWDDTTTSVNDGDDEVDDHLDLPRGQGCGIPCYWSKRIPKHRGMCRSCYSPSLSDAIRRKGSSILCGSQTIYPRHRRSLSTSNKRRISSRSTQGVLPLLTSSGDFRGGSSLGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLDIVALNGEGDEESTPDNTRTFSQKYKPKFFSDLIGQNIVVQTLVSAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCLAPYDSKPCGYCRECTDFVSNKSRHLLEVDGTNKKGMDSVRYILKKLSVGSSSAYSQYMFLVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDPDNVPRTIQSQCQKYLFNKIKDGDIVARLRKISTEENLDVETDTLNLIAMNADGSLRDAETMLEQMSLLGERITTSLVNELIGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGSYTVIDANPGDSFFGGRSLNESELERLKQALKLLSEAEKQLRSSSERSTWFTATLLQLGSMPSPDLTPSDSSRKQGSKTTEEDPSSASREVTVSKQNSDALFMPRKSTSPASLHKVVNSNPSHQRDISSKFDGLNGNSKPSGKYDGATPVSRDDLVGNMMFRCVDSGKLFDIWARCIGRCHSKTLRQLLYNHGKLMSICEVEGVLVAYVAFGDGDVKLRAERFLSSITNSMEMVLRRNVEVRIVHLPDAEGENQVNLLELKQAEKTMTSEKEQRGGHVNGTEAYSNLPPLLDGNFPSNTNPSDVRERRQDLPMQRIGSIIREQRLETAWLQAVGKCSPGSLSRLRPERNQVLPQEGIYYEDQMESTDSTRFPSQHLENELKVLKVKNGRVLQKDQVGKRSDRYPMSPSLLHNSSLATNSSKDNLGYESGTGPGGCSGFLCWNNSKRRRVKVKSNYVRARKVGSFPLFGECGKSKRKESGR 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00817 1250 MobiDBLite consensus disorder prediction 831 918 - -
Bva14g00817 1250 MobiDBLite consensus disorder prediction 856 914 - -
Bva14g00817 1250 CDD HLD_clamp_pol_III_gamma_tau 654 717 IPR045085 -
Bva14g00817 1250 SUPERFAMILY post-AAA+ oligomerization domain-like 725 826 IPR008921 GO:0003677|GO:0006260
Bva14g00817 1250 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 205 1189 - -
Bva14g00817 1250 MobiDBLite consensus disorder prediction 1165 1186 - -
Bva14g00817 1250 MobiDBLite consensus disorder prediction 60 89 - -
Bva14g00817 1250 MobiDBLite consensus disorder prediction 1039 1075 - -
Bva14g00817 1250 MobiDBLite consensus disorder prediction 32 46 - -
Bva14g00817 1250 Coils Coil 787 817 - -
Bva14g00817 1250 Gene3D - 718 832 - -
Bva14g00817 1250 CDD AAA 493 651 - -
Bva14g00817 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 701 IPR027417 -
Bva14g00817 1250 SMART AAA_5 511 673 IPR003593 -
Bva14g00817 1250 Gene3D - 471 652 IPR027417 -
Bva14g00817 1250 Pfam DNA polymerase III subunits gamma and tau domain III 708 774 IPR022754 GO:0003887
Bva14g00817 1250 MobiDBLite consensus disorder prediction 104 134 - -
Bva14g00817 1250 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 479 828 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Bva14g00817 1250 MobiDBLite consensus disorder prediction 25 46 - -
Bva14g00817 1250 PANTHER PROTEIN STICHEL-LIKE 1 205 1189 - -
Bva14g00817 1250 Gene3D - 656 717 - -
Bva14g00817 1250 Pfam DNA polymerase III, delta subunit 494 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00817 Bva-Chr14 3806000 3811719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00817 482 769 Core DNA Replication Machinery Family AT1G21690 25.253 3.90e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00817 - - gmx:100814391 1716.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00817 14 3806000 3811719 Bva14g00817 14 3806000 3811719 ECH