Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00816 ATGGAACACCCAATACCTCGCACAGTGGAGGAGGTTTTCAGCGACTTTAAGGGAAGACGAGCTGGATTGATAAAAGCCCTCAGTTCTGATGTTCAAAAGTTCTACCAGCAGTGCGATCCTGATAAGGAGAACTTGTGTTTATATGGATTTCCAAATGAGACGTGGGAAGTGAATCTTCCAGTTGAGGAAGTGCCTCCCGAACTGCCTGAGCCAGCGTTAGGTATTAATTTTGCTAGGGACGGAATGCAAGAGAAAGACTGGTTGTCTCTGGTTGCAGTTCATAGTGACTCATGGCTACTTGCCGTTGCTTTCTATTTTGGTGCTCGTTTTGGGTTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATTAATGATCTCCCAACCATATTTGAAGTTGTGACCGGAAGTGCTAAACAACCAAAGGATCAATCAGCTGCTCACAACAATGGTAGCAAAAGCAAATCAAGTGGGAAGGCCCGCCAATCTGGTTCTCAGGCTAAGGGAGTGAAGATGTCTCCACCACCCAAAGAAGAGGATGAAAGTGGAGAAGAAGATGAGGAGGACGATGAACAAGGCGCAACATGTGGGGCCTGTGGTGATAATTATGCAAATGATGAGTTCTGGATCTGTTGTGATGTGTGTGAGAGATGGTTTCATGGAAATTGTGTAAAAATTACTCCTGCTAAGGCTGAGCATATCAAGCAATACAAGTGCCCAAGCTGCAGTAACAAGAAGGCTAGAGTTTA 749 0.4459 MEHPIPRTVEEVFSDFKGRRAGLIKALSSDVQKFYQQCDPDKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQPKDQSAAHNNGSKSKSSGKARQSGSQAKGVKMSPPPKEEDESGEEDEEDDEQGATCGACGDNYANDEFWICCDVCERWFHGNCVKITPAKAEHIKQYKCPSCSNKKARV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00816 249 SMART PHD_3 195 243 IPR001965 -
Bva14g00816 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Bva14g00816 249 Pfam Alfin 8 136 IPR021998 GO:0006355|GO:0042393
Bva14g00816 249 MobiDBLite consensus disorder prediction 138 193 - -
Bva14g00816 249 SUPERFAMILY FYVE/PHD zinc finger 184 246 IPR011011 -
Bva14g00816 249 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 2 246 - -
Bva14g00816 249 MobiDBLite consensus disorder prediction 179 193 - -
Bva14g00816 249 MobiDBLite consensus disorder prediction 138 169 - -
Bva14g00816 249 CDD PHD_AL_plant 196 245 IPR044104 -
Bva14g00816 249 Pfam PHD-finger 196 245 IPR019787 -
Bva14g00816 249 PANTHER CPG BINDING PROTEIN 2 246 IPR045104 GO:0006355|GO:0042393
Bva14g00816 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 248 IPR013083 -
Bva14g00816 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00816 Bva-Chr14 3798586 3802656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00816 1 246 Alfin-like Transcription Factor Family AT1G14510 82.114 6.80e-134 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bva14g00816 Alfin 5.5e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00816 14 3798586 3802656 Bva14g00816 14 3798586 3802656 ECH