Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00708 ATGGAAATGGACCCTGGCAAGCTTTTCATTGGTGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACagtattttcagaattttggAGATGTGGTTGAGGCTGTAATAATGAAGGACCGCACCACAGGGCGTGCCCGTGGTTTTGGATTTGTTGTTTTCTCTGATCCTTCCGTTGCTGAACGAGTTGTTATGGAAAAACATGTCATTGATGGTAGAAATGTTGAAGCAAAAAAAGCTGTTCCCAGAGACGATCAGAACATTCTGAACAGAAGCAATGGCAGCAGCACTCATGGGTCACCTGGACCTAGCCGCACAAAGAAGATATTTGTAGGAGGCCTAGCATCCACAGTCACCGAGAGCGACTTTAAGAagtattttgatcaatttggAACAATCACAGATGTTGTTGTGATGTATGATCATAACACCCAAAGGCCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGATGCGGTGGAGAAAGTTCTGTACAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTAAAGCGGGCTGTTCCAAAGGAATTATCTCCAGGTTCTAGTAGAGGCCAATTAGCTGGAAATAATTTTGGTCTGAATAGAGTTAATAGCTTTTCTAATGGTTCCCTTCAAGGGTATAATCCAAGCTTGGTTGGTGGGCTTGGACTTAGGACAGATGGCAGATTTAGTCCTATTACTGTTGGTCGGAGTGGATATCCTCCTTTTAGTCCTAGTTATGGGGCAGGGCTCAATTATGAGTCTAACTTGAGTCAAAATGGGAATGCAAACTTCACTTCTACTCTCTCCTTAGGACGGACAATGAACCCTACTTATACTGGAAGTTCAAGTAGGTACATTAATGGCATTGGATATGCTGGGACAAGTGGAGGCAACAGTTCAACCCTAAGTTCCCCAAGTCAGAATTTTTGGGGTAATGGGAGTCTTAACTATGCTCCTAACTCTGCAAGCTCTGATTCTTTTGTTGGATATGGAagtgaaaattcaaatatggGTTCTTATGGTAGTATTGGAGCACTTTGGGGTTCCTCCCCTAACTTGGATCAAGTTGGATCAATTGGCTCTGGCTACGGTAAGGGCAGTCTTAGCTATGGCAATGGTGATCTGATATTTGGTTCAAAAGCTGTAGGTTATGGAAAAAGTAGTGAAAACCTTCTTGCAACATCTTCATCATATGCTCTATCAAATGGCAATTATGATGGGGCATATAAAGATACTTTTGAAGCTGGGTCGTTTTATGACCAAACTTGGCGATCACCGCCTTCAGAATTAGAGGATTCTGGCTCCCTTGGTTATGGCTTTGGAAATGCTGTTTCAGATTTGATGAGTAAAAGTTCTGGTAGCCACATCGGGGCTTATACCGTTGCAAATAGACAATCAAATAGAGGAATTGCTGCCTA 1430 0.4133 MEMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFSDPSVAERVVMEKHVIDGRNVEAKKAVPRDDQNILNRSNGSSTHGSPGPSRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLYKTFHELNGKMVEVKRAVPKELSPGSSRGQLAGNNFGLNRVNSFSNGSLQGYNPSLVGGLGLRTDGRFSPITVGRSGYPPFSPSYGAGLNYESNLSQNGNANFTSTLSLGRTMNPTYTGSSSRYINGIGYAGTSGGNSSTLSSPSQNFWGNGSLNYAPNSASSDSFVGYGSENSNMGSYGSIGALWGSSPNLDQVGSIGSGYGKGSLSYGNGDLIFGSKAVGYGKSSENLLATSSSYALSNGNYDGAYKDTFEAGSFYDQTWRSPPSELEDSGSLGYGFGNAVSDLMSKSSGSHIGAYTVANRQSNRGIAA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00708 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 476 - -
Bva14g00708 476 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Bva14g00708 476 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bva14g00708 476 SMART rrm1_1 108 180 IPR000504 GO:0003723
Bva14g00708 476 MobiDBLite consensus disorder prediction 86 103 - -
Bva14g00708 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 68 IPR000504 GO:0003723
Bva14g00708 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 167 IPR000504 GO:0003723
Bva14g00708 476 CDD RRM2_DAZAP1 105 184 IPR034131 GO:0003723
Bva14g00708 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bva14g00708 476 SUPERFAMILY RNA-binding domain, RBD 102 202 IPR035979 GO:0003676
Bva14g00708 476 MobiDBLite consensus disorder prediction 82 106 - -
Bva14g00708 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Bva14g00708 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Bva14g00708 476 Gene3D - 104 194 IPR012677 -
Bva14g00708 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bva14g00708 476 Gene3D - 5 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00708 Bva-Chr14 3274632 3278607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00708 8 219 Eukaryotic Initiation Factors Gene Family AT2G36660 30.317 4.87e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00708 K14411 - jre:108993403 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00708 14 3274632 3278607 Bva14g00708 14 3274632 3278607 ECH