Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00655 ATGGAGGGTAATAGTTCTAACGGCAGTTCCTCTGTGATGGGGTTTGGAGAGAACAGTAGTGGGATATGTCCAACGATGATGATGCCTTTAGTGACTTCTCGTCATGGTGGTCATCATCCaataaatcctaatcctaatgCAGACACAAACAGTCTCTTCCTTCCTATGCCTTGCACTAACCATCACGACTCAAACCGCAATAACACTGGCAGCTCCTCTCTCATGCTTCACAATAAccaaaacaacaacaacactGGGTTAGGGTGTTATTTCATGGAGAGCGACCACAACAACGATGGTAgctcatcttcttcttctgtcaAGGCCAAGATCATGGCTCATCCTCACTACCATCGTCTCTTGGCTGCCTACGTCAATTGTCAAAAGGTTGGAGCACCTCCTGAAGTGGTAGCAAGGATAGAAGGAGCATGTGCTTCTGCAATGACAATGGCAGGTGATGCGGCTGGCTCATCCAGCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACCAAGTACGAGCAAGAGCTCTCGAAACCCTTCAAGGAAGCCATGCTATTCCTTCAAAGGATCGAGTGTCAGTTTAAAGCTCTCACAATTTCGTCTTCGGACTTTGGTGGTAACGAAGGTGGTGATAGGAATGGATCATCAGAAGAAGACGTTGATGTACAAAACATGATAGATCCTCAGGCCGAGGACCGAGAATTGAAGGGTCAGCTTCTGCGCAGGTACAGCGGATACTTAGGTAGCCTCAAGCAGGAATtcatgaagaagagaaagaaaggaaagctgcctAAAGAAGCAAGGCAACAATTGCTTGATTGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAGTCACAGAAGCTTGCTCTTGCGGAATCAACAGGGCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAGAGGCACTGGAAGCCTTCTGAGGAAATGCAGTTTGTGGTGATGGATGCCTCCCATCCCCACTATTACATGGATAATGTTTTGGGCAATCCTTTTCCCATGGATCTCCCTCATACAGTGCTCTA 1082 0.4316 MEGNSSNGSSSVMGFGENSSGICPTMMMPLVTSRHGGHHPINPNPNADTNSLFLPMPCTNHHDSNRNNTGSSSLMLHNNQNNNNTGLGCYFMESDHNNDGSSSSSSVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARIEGACASAMTMAGDAAGSSSIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRIECQFKALTISSSDFGGNEGGDRNGSSEEDVDVQNMIDPQAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEEMQFVVMDASHPHYYMDNVLGNPFPMDLPHTVL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00655 360 Gene3D - 260 332 - -
Bva14g00655 360 Pfam Homeobox KN domain 282 321 IPR008422 GO:0003677|GO:0006355
Bva14g00655 360 ProSitePatterns 'Homeobox' domain signature. 300 323 IPR017970 GO:0000981|GO:0006355
Bva14g00655 360 SUPERFAMILY Homeodomain-like 264 339 IPR009057 -
Bva14g00655 360 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 351 - -
Bva14g00655 360 SMART HOX_1 264 329 IPR001356 GO:0003677
Bva14g00655 360 ProSiteProfiles ELK domain profile. 242 262 IPR005539 GO:0003677
Bva14g00655 360 SMART ELK_2 242 263 IPR005539 GO:0003677
Bva14g00655 360 Pfam ELK domain 242 263 IPR005539 GO:0003677
Bva14g00655 360 Pfam KNOX2 domain 159 206 IPR005541 GO:0003677|GO:0005634
Bva14g00655 360 SMART KNOX1_2 105 149 IPR005540 GO:0003677|GO:0005634
Bva14g00655 360 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 1 351 - -
Bva14g00655 360 SMART KNOX2_2 156 207 IPR005541 GO:0003677|GO:0005634
Bva14g00655 360 ProSiteProfiles 'Homeobox' domain profile. 262 325 IPR001356 GO:0003677
Bva14g00655 360 Pfam KNOX1 domain 107 145 IPR005540 GO:0003677|GO:0005634
Bva14g00655 360 CDD homeodomain 274 326 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00655 Bva-Chr14 3052164 3057180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00655 107 354 Homeobox Transcription Factor Family AT1G62360 81.569 5.09e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva14g00655 KNOX2 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00655 - - gmx:547796 568.926