Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00629 ATGGCCACTTTGACCACTGTTCTAGTGCTTTCATGCTTCATATCTTACCTTGTTTCAACCTCCAATGCCTCTTCAAGCTCTATCCCAAAAACTCCAAAGAGTCTAGTTCCTAACAAAATAGACTCTTGCTGGCGCACCAAATCAAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCTGTTGGCTATGGCAAAGATGCCATTGGTGGCAAATATGGTGCCATATACAAGGTCACTGACCCCTCTGATGACCCTGTCAACCCCAAACCAGGAACACTTCGATATGGTGTAATCCAAAACCAGCCCCTTTGGATCATTTTTGACAGAGACATGGTTATCACCCTCAAGAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAAAGTGGAGATTGCAAATGGGCCATGCATTACAATTCAAGATGTTAGCCATGTTATTATACATGGCATTAGCATCCATGATTGTAAACCAGGCAAGGCTGCAATGGTGAGGAGTTCCCCTGACCATGTTGGCCATCGTCAAGGATCTGATGGAGATGCCATTAGTATATTTGCTTCTTCAAATATTTGGATCGACCATTGCTTTTTCGCTCGCTGTGCTGATGGCCTTATTGATGTTATCCATGCTTCAACTGCAGTTACAATCTCTAATAATTACTTCACTCAGCATGACAAAGTGTTGTTACTAGGACACAATGATGCATATACGGCAGACAGAATAATGAGAGTGACTATAGCCTTCAACCGTTTTGGTAGTGGCCTAATTGAAAGGATGCCAAGGGTGAGGTTTGGTTATGCCCATGTGGTCAACAACAAATATGACGAGTGGCAGATGTATGCCATTGGTGGCAGCGCTAACCCAACAATTTTAAGTGAAGGGAACTACTTTGTAGCTCCAAATAATCCCAATAACAAACAGGTTACCAAGAGGGAAGCGAAGAATGGCTGGAAGAATTGGAAATGGAGGTCTTACAAGGATGCATTCCTAAATGGGGCTTATTTTGTTCCCTCGGGGTATGGAAGCTGTGATCCTTATTATACATCTGCTCAGTCTTTTATCGCTTCTCCAGCGGCCCTTGTGCCTACATTAACTCTCAATGCAGGCCGTCTAAGCTGTGTTGTTGGTAAAACATGTTA 1154 0.4359 MATLTTVLVLSCFISYLVSTSNASSSSIPKTPKSLVPNKIDSCWRTKSNWASNRQALADCAVGYGKDAIGGKYGAIYKVTDPSDDPVNPKPGTLRYGVIQNQPLWIIFDRDMVITLKNELIMNSYKTIDGRGAKVEIANGPCITIQDVSHVIIHGISIHDCKPGKAAMVRSSPDHVGHRQGSDGDAISIFASSNIWIDHCFFARCADGLIDVIHASTAVTISNNYFTQHDKVLLLGHNDAYTADRIMRVTIAFNRFGSGLIERMPRVRFGYAHVVNNKYDEWQMYAIGGSANPTILSEGNYFVAPNNPNNKQVTKREAKNGWKNWKWRSYKDAFLNGAYFVPSGYGSCDPYYTSAQSFIASPAALVPTLTLNAGRLSCVVGKTC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00629 384 SUPERFAMILY Pectin lyase-like 38 375 IPR011050 -
Bva14g00629 384 Pfam Pectate lyase 119 302 IPR002022 -
Bva14g00629 384 PANTHER PECTATE LYASE 5 383 - -
Bva14g00629 384 Gene3D - 37 377 IPR012334 -
Bva14g00629 384 PANTHER PECTATE LYASE 18-RELATED 5 383 IPR045032 GO:0030570
Bva14g00629 384 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Bva14g00629 384 PRINTS Pollen allergen Amb family signature 83 108 IPR018082 -
Bva14g00629 384 PRINTS Pollen allergen Amb family signature 355 378 IPR018082 -
Bva14g00629 384 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Bva14g00629 384 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Bva14g00629 384 PRINTS Pollen allergen Amb family signature 325 349 IPR018082 -
Bva14g00629 384 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
Bva14g00629 384 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Bva14g00629 384 SMART amb_all 111 308 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00629 Bva-Chr14 2957860 2959293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00629 8 384 Polysaccharide Lyase AT1G11920 71.164 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00629 K01728 - gmx:100807483 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00629 14 2957860 2959293 Bva14g00629 14 2957860 2959293 ECH