Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00581 ATGATGCAGCCGGGATCTGGTATGCCTCCGCCAACCATGGGCCAGCAACCGAACCAACAATACCAGCAGCACCAACCGTACATGATGATGCCTCCGCAGGCCCAGGCGCCGCCGATGTGGGCTCAACCCGCTCAGCCACCGCCCCAATCGGTTGCTCCACCGCAGCCGACACAATCGGCCCAACCAACAAGCGCCGATGAGGTTCGCACTCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTATCTTTATACTTGTTTTGCTCACACCGGCGAGGTGGCATCAGTGAAAGTAATACGGAATAAACAAACTAATCAATCCGAAGGTTATGGGTTTATTGAGTTTTACACTCGCGCAGCTGCTGAGAGAATACTTCAATCATTTAATGGTACTATTATGCCAAATGGTGGACAAAGCTTCAGGCTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGACAAGACGATACTCCAGACTACACGGTATTTGTAGGGGACTTGGCCGCAGATGTTACCGATTACATGCTACAGGAGACATTTAGGAGTCGGTATGCCTCAGTTAAGGGTGCAAAAGTTGTAATCGATAGGCTAACTGGGCGAACAAAGGGTTATGGCTTTGTTAGATTTGGAAATGAGAGTGAGCAAGTGCAAGCTATGACTGAGATGCAAGGAGTTCTTTGTTCAACAAGGCCCATGCGCATTGGGCCAGCCACTAACAAAAACCTTGGGAATCAGCAAAAAGCCTCGTATCAGAATACTCAAGGGGGGACTCAGAACGAGAATGATCCAAATAACACAACTATATTTGTCGGTAATTTGGATCCTAATGTCACCGATGATCATCTAAGACAAGTTTTTGGTCAGTATGGAGAGTTAGTACATGTTAAGATTCCAGCAGGGAAACGATGTGGGTTCGTTCAATTTGCTGATAGGAGCTGTGCAGAAGAGGCACTGCGGATGTTGAATGGAACGGTGTTGGGTGGACAAAACGTTCGGCTTTCATGGGGCCGTAGTCCTTCAAACAAACAGGCTCAGCCAGATCAAAACCAATGGAATGGTGGTGGTGGATATTACGGATATGCCCAGGGGTATGAAAATTATGGATATGCCCCTACTGCTGCAGGAGCTGGTGCTCAAGACCCCAACATGTATGGTGGCTATCCTGGGTACTCCAATTACCAACCACctcagcaacaacaacaaatgGGATATAGTTA 1223 0.4759 MMQPGSGMPPPTMGQQPNQQYQQHQPYMMMPPQAQAPPMWAQPAQPPPQSVAPPQPTQSAQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTNQSEGYGFIEFYTRAAAERILQSFNGTIMPNGGQSFRLNWATFSAGERRQDDTPDYTVFVGDLAADVTDYMLQETFRSRYASVKGAKVVIDRLTGRTKGYGFVRFGNESEQVQAMTEMQGVLCSTRPMRIGPATNKNLGNQQKASYQNTQGGTQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTVLGGQNVRLSWGRSPSNKQAQPDQNQWNGGGGYYGYAQGYENYGYAPTAAGAGAQDPNMYGGYPGYSNYQPPQQQQQMGYS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00581 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Bva14g00581 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 227 IPR000504 GO:0003723
Bva14g00581 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 136 IPR000504 GO:0003723
Bva14g00581 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Bva14g00581 407 CDD RRM1_SECp43_like 70 150 - -
Bva14g00581 407 MobiDBLite consensus disorder prediction 1 65 - -
Bva14g00581 407 CDD RRM3_NGR1_NAM8_like 267 338 - -
Bva14g00581 407 Gene3D - 154 248 IPR012677 -
Bva14g00581 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
Bva14g00581 407 SUPERFAMILY RNA-binding domain, RBD 257 365 IPR035979 GO:0003676
Bva14g00581 407 SUPERFAMILY RNA-binding domain, RBD 50 148 IPR035979 GO:0003676
Bva14g00581 407 Gene3D - 10 153 IPR012677 -
Bva14g00581 407 CDD RRM2_SECp43_like 161 240 - -
Bva14g00581 407 SMART rrm1_1 70 145 IPR000504 GO:0003723
Bva14g00581 407 SMART rrm1_1 269 336 IPR000504 GO:0003723
Bva14g00581 407 SMART rrm1_1 163 237 IPR000504 GO:0003723
Bva14g00581 407 MobiDBLite consensus disorder prediction 31 55 - -
Bva14g00581 407 SUPERFAMILY RNA-binding domain, RBD 150 259 IPR035979 GO:0003676
Bva14g00581 407 MobiDBLite consensus disorder prediction 393 407 - -
Bva14g00581 407 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 404 - -
Bva14g00581 407 MobiDBLite consensus disorder prediction 12 29 - -
Bva14g00581 407 MobiDBLite consensus disorder prediction 387 407 - -
Bva14g00581 407 Gene3D - 249 374 IPR012677 -
Bva14g00581 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Bva14g00581 407 MobiDBLite consensus disorder prediction 239 269 - -
Bva14g00581 407 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00581 Bva-Chr14 2738086 2741806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00581 68 347 Eukaryotic Initiation Factors Gene Family AT2G23350 28.421 3.30e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00581 - - aprc:113864230 562.377