Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00553 ATGGCTGACTCAGAACATTCCTCCGCTAATCAAGTCTTGGAGAATCCTCAAGAAGAGACAAACGAAGAACCAAAGCTACATTTCTCTGATGATGAGGAAGCACTTATTATCAGAATGTATAATCTAGTGGGCGAAAGGTGGGCCCTGATAGCTGGAAGGATCCCTGGAAGAACAGCAGAAGAGATTGAAAAGTATTGGACCTCTAGATACTCAACGAGTCAATG 224 0.433 MADSEHSSANQVLENPQEETNEEPKLHFSDDEEALIIRMYNLVGERWALIAGRIPGRTAEEIEKYWTSRYSTSQ 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00553 74 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC1 1 74 - -
Bva14g00553 74 Gene3D - 27 69 - -
Bva14g00553 74 CDD SANT 28 66 IPR001005 -
Bva14g00553 74 SUPERFAMILY Homeodomain-like 27 70 IPR009057 -
Bva14g00553 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 74 IPR017930 -
Bva14g00553 74 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Bva14g00553 74 SMART sant 24 72 IPR001005 -
Bva14g00553 74 MobiDBLite consensus disorder prediction 1 17 - -
Bva14g00553 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 74 - -
Bva14g00553 74 MobiDBLite consensus disorder prediction 1 28 - -
Bva14g00553 74 Pfam Myb-like DNA-binding domain 27 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00553 Bva-Chr14 2629896 2630467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00553 27 68 MYB Transcription Factor Family AT5G35550 61.905 4.29e-14 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva14g00553 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00553 - - qsu:112016294 120.938
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00553 14 2629896 2630467 Bva14g00553 14 2629896 2630467 ECH