Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00550 ATGGATGTGTTTTTTGATCTGCAGAGAGGGAAGTCATTCTCCATTGAAGTTGGTTATTTTGACACTGTGATGGAGATCAAAGAGAAGATACAGAAGTACCAGGCTATACCCGTTTCCAAACAGACCTTAATCTTCAATGGCAAAGTTTTACAAGATGACGGCGATGTCGACAAATGTGTAATCCTTCACAACTCCCACATTCAGCTCGTTGTTGCCTCAGATTCCGACAAAACCGCCGTCAAGACGGAGCAGTTGTCGCCGTCGGCCAAAACCAAAATCCAGCTCAACGTTAAGACCCCTTTGTCTAAAATGCATGTCCCCGTAGAAATGGACGTCAACGACACCGTTTTGAGACTGAAGGAGAGGATCCAGGAGATGGAAGGAGTACCAGTTAGTAAGGCGGTGATTCATGCAACTGGCGCAGAATTGCATGACCAGCAATTGCTACGTGACTGTGAGGTTTCGGATAATTCTGAGATCGACGCGAGTTTCGGACCGTCATCCACCACTTGGGCGGCGGCGGCAACAGTGGCAGTGCCGGCAAAGAAGTTGAAACTGATTGTGTTGCCTAAATGCGGGACAGAGAAGATACCGGTGGAGATGAATGGTTCGGATAACGTGGGAGAATTGAGGAAGGAACTGCAGAAATTGCAGCAGAGGCTTCAATTTAATCTTCCGCAAGAGggttattttttcatttacaagCAGAATGTGATGGATGACGATAAGTCCTTTCGCTGGCACCATGTTGGGCAGGGCGACACCATTGAAATCTTCAATGGAAGCGTTACTGGTGGATCATA 803 0.4645 MDVFFDLQRGKSFSIEVGYFDTVMEIKEKIQKYQAIPVSKQTLIFNGKVLQDDGDVDKCVILHNSHIQLVVASDSDKTAVKTEQLSPSAKTKIQLNVKTPLSKMHVPVEMDVNDTVLRLKERIQEMEGVPVSKAVIHATGAELHDQQLLRDCEVSDNSEIDASFGPSSTTWAAAATVAVPAKKLKLIVLPKCGTEKIPVEMNGSDNVGELRKELQKLQQRLQFNLPQEGYFFIYKQNVMDDDKSFRWHHVGQGDTIEIFNGSVTGGS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00550 267 CDD Ubl_ubiquitin_like 195 259 - -
Bva14g00550 267 Pfam Ubiquitin family 193 257 IPR000626 GO:0005515
Bva14g00550 267 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Bva14g00550 267 Pfam Ubiquitin family 95 161 IPR000626 GO:0005515
Bva14g00550 267 ProSiteProfiles Ubiquitin domain profile. 184 265 IPR000626 GO:0005515
Bva14g00550 267 Gene3D - 1 72 - -
Bva14g00550 267 PRINTS Ubiquitin signature 11 31 IPR019956 -
Bva14g00550 267 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bva14g00550 267 ProSiteProfiles Ubiquitin domain profile. 93 160 IPR000626 GO:0005515
Bva14g00550 267 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Bva14g00550 267 Gene3D - 179 260 - -
Bva14g00550 267 SMART ubq_7 93 165 IPR000626 GO:0005515
Bva14g00550 267 SMART ubq_7 186 261 IPR000626 GO:0005515
Bva14g00550 267 SMART ubq_7 1 72 IPR000626 GO:0005515
Bva14g00550 267 ProSiteProfiles Ubiquitin domain profile. 1 71 IPR000626 GO:0005515
Bva14g00550 267 Gene3D - 73 162 - -
Bva14g00550 267 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bva14g00550 267 SUPERFAMILY Ubiquitin-like 76 161 IPR029071 -
Bva14g00550 267 CDD Ubl_ubiquitin_like 95 160 - -
Bva14g00550 267 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 1 266 - -
Bva14g00550 267 SUPERFAMILY Ubiquitin-like 185 259 IPR029071 -
Bva14g00550 267 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00550 Bva-Chr14 2621641 2622874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00550 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.620 2.24e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00550 - - jcu:119369119 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00550 14 2621641 2622874 Bva14g00550 14 2621641 2622874 ECH