Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00488 ATGGGTGCTCCAAAGCAGAAATGGACAccagaagaagaagcagcCCTTAAAGCTGGAGTTGTTAAGCACGGGGCTGGGAAATGGCGCACAATACTTAAGGACCCAGAATTTAGTAGTGTTCTGTATCTGCGGTCAAATGTTGATCTCAAGGATaaatggagaaatttgagtGTGATGGCAAATGGATGGAGTTCCAGGGACAAGTCCAGGTTAGCTGTTAGAAGGGTGCATCAGGTCCCAAAACTGGATGAGAACTCTATGGCTCTTGCTACTGTTCCAAGCGATGAAGAAATTACCGAAGTTCAGCCTCTTCAAGTTGCAAGAGATTTGGTGCAGCTTCCAGGTCCGAAGAGGTCTATTGTGAGaTTGGATAACCTTATAATGGAAGCAATAACTAGCTTGAAGGAGCCTGGTGGTTCCAATAAGACTACTATTGCAGCTTACATAGagGATCAATATTGGGCACCCTCAGACTTCAAAAGGTTATTGTCTGCAAAACTAAAGTTTTTGACTGCAAGTGGAAAACTGATCAAgGTAAAACGCAAGTATAGGATTGCACCTACTCCGATTTATCCTGACAGAAGAAGACACCCACCCATGTTATTATTGGATGGAAGGCAGAGAGCCtctatgaaatttgaaaaggaaGAGACTGATATCGTTACAATTACAAAAGCTCAGATAGATTTAGAATTAGCAAAGATGAGGTCTATGACTCCACAAGAGGCAGCTATAGTTGCTGCTCGAGCAgttgcagaagcagaagctgCCATGGCAGAAGCTGAAGATGCTGCAAGGGAGGCAGAAGCTGCTGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGATGCTGCATCGAAAACATTGAAAGGGCGAAACACCCAAAAGATGATGATCCGAGCTTG 905 0.4088 MGAPKQKWTPEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVRRVHQVPKLDENSMALATVPSDEEITEVQPLQVARDLVQLPGPKRSIVRLDNLIMEAITSLKEPGGSNKTTIAAYIEDQYWAPSDFKRLLSAKLKFLTASGKLIKVKRKYRIAPTPIYPDRRRHPPMLLLDGRQRASMKFEKEETDIVTITKAQIDLELAKMRSMTPQEAAIVAARAVAEAEAAMAEAEDAAREAEAAEADAEAAQAFADAASKTLKGRNTQKMMIRA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00488 301 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bva14g00488 301 SUPERFAMILY "Winged helix" DNA-binding domain 116 197 IPR036390 -
Bva14g00488 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bva14g00488 301 SMART sant 4 59 IPR001005 -
Bva14g00488 301 PANTHER SINGLE MYB HISTONE 4 1 298 IPR044597 GO:0003691
Bva14g00488 301 Gene3D - 117 193 IPR036388 -
Bva14g00488 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bva14g00488 301 Pfam linker histone H1 and H5 family 124 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva14g00488 301 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 298 - -
Bva14g00488 301 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva14g00488 301 Gene3D - 2 59 - -
Bva14g00488 301 Coils Coil 247 281 - -
Bva14g00488 301 CDD SANT_TRF 6 56 - -
Bva14g00488 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva14g00488 301 SUPERFAMILY Homeodomain-like 2 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00488 Bva-Chr14 2335094 2340535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00488 1 301 Single Myb Histone (SMH) Gene Family AT1G49950 67.320 1.08e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva14g00488 Linker_histone 2.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00488 K09422 - jre:108979731 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00488 14 2335094 2340535 Bva14g00488 14 2335094 2340535 ECH