Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00487 ATGGCAAATCCAACAGCCCAATTTTCAGGAACCACACAGAAATGCATGGCATGTGACAAGACCGTATACCTTACCGAAAAGGTAACTGCAGATTGTCGTGTCTTTCACAAGAACTGCTTCCGATGCCACCATTGCAACAATACCCTCAAGCTTAGCAACTATTGTTCCATTGATGGGGTGCTCTACTGCAGACCTCACTATGATCAAACCTTCAAGAGAACTGGCAGCCTGGAAAAGAGTTTCGAAGGAACACCCAAAATTCAGAAACCAGAAAAACTGACTGATACTGAGATTACTAAGGCACTCTCAAACGTGTTCGTGGGCACCAAAGACAAATGTGCGGCTTGCACAAAGACAGTTTATGTTACTGAAAGGATTTCAATAAATGGAACTCCCTACCACAAGGGCTGCTTCAAGTGTACCCATGGAGGTTGTACCATAAGCTCATCAACCTTTGTTACACATGAAGGAAAGCTGTACTGCAAGCACCATCACATTCAACTCTTTAAAGAGAAAGGCAACTACAGCCAGCTTGATAGCGATAAGAATTCTGTGACTGAGAAAGTCTCAACCTTGGAAATAGCCGCTGAATCATG 596 0.4362 MANPTAQFSGTTQKCMACDKTVYLTEKVTADCRVFHKNCFRCHHCNNTLKLSNYCSIDGVLYCRPHYDQTFKRTGSLEKSFEGTPKIQKPEKLTDTEITKALSNVFVGTKDKCAACTKTVYVTERISINGTPYHKGCFKCTHGGCTISSSTFVTHEGKLYCKHHHIQLFKEKGNYSQLDSDKNSVTEKVSTLEIAAES 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00487 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 41 81 - -
Bva14g00487 198 ProSiteProfiles LIM domain profile. 111 171 IPR001781 -
Bva14g00487 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 177 - -
Bva14g00487 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 138 - -
Bva14g00487 198 ProSitePatterns LIM zinc-binding domain signature. 15 49 IPR001781 -
Bva14g00487 198 SMART lim_4 14 66 IPR001781 -
Bva14g00487 198 SMART lim_4 112 164 IPR001781 -
Bva14g00487 198 ProSiteProfiles LIM domain profile. 13 73 IPR001781 -
Bva14g00487 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 40 - -
Bva14g00487 198 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 6 196 - -
Bva14g00487 198 Pfam LIM domain 113 168 IPR001781 -
Bva14g00487 198 Pfam LIM domain 15 70 IPR001781 -
Bva14g00487 198 Gene3D Cysteine Rich Protein 9 79 - -
Bva14g00487 198 Gene3D Cysteine Rich Protein 107 177 - -
Bva14g00487 198 PANTHER OS06G0237300 PROTEIN 6 196 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00487 Bva-Chr14 2331664 2333059 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Bva14g00487 LIM 4.3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00487 K09377 - jre:108979722 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00487 14 2331664 2333059 Bva14g00487 14 2331664 2333059 ECH